PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g046480.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 477aa    MW: 53993.1 Da    PI: 6.1411
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g046480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.52.3e-102564443
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    + k +r+v  skRr++++ KA  L+ L +a++av + s+ 
  Csa06g046480.1 25 DTKQQRSVACSKRRQTLFSKAADLCFLSGANIAVFVTSPA 64
                    56889*******************************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.5591462IPR002100Transcription factor, MADS-box
SMARTSM004328.7E-161473IPR002100Transcription factor, MADS-box
CDDcd002661.23E-201582No hitNo description
SuperFamilySSF554551.57E-1516107IPR002100Transcription factor, MADS-box
PfamPF003195.0E-102773IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.40.50.6203.9E-32258361IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF523741.66E-18269362No hitNo description
PfamPF014673.3E-12269357IPR004821Cytidyltransferase-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009058Biological Processbiosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MPSNECTMTM KRGGTKRKIE IKKRDTKQQR SVACSKRRQT LFSKAADLCF LSGANIAVFV  60
TSPAENNDVV YSFSGYSPAS EIADCYLNGK PPTTSINPQT KLGFWWEDPD LYRNCDDISE  120
LNVIEDRMMR TRKHLMDCLE KKEKTQFVSN SDHQNPSSSS LDENPKSSTP SSCDEIASFE  180
QNSTLSSFEK ICGEPSSQAT CYYDQNHTFA FEDLYRDDDG FVESLWETEK QRSDIMSIFQ  240
EPSNLRIVEV FDESIYRDKT CLVLVATRSF NPPPTFMHLR IFELARDALH SDGFHVLGDY  300
MSPVNDAYKK KGLLSAKHRL EMCNLACQSS DFVMVDPWEG SQSSYQRTSA VLSRVKTFLT  360
TNRHVQPEGN CSIISVGLLA MCCHVSVLAS YYANYKLKFY SMCFLMLESV KSHATMWLGS  420
TAIFLHSWCL DPSTVLLTIY AFLNSGYLKR QDNMFSGDKI LNESGDNIRI VDNVVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z9r_A2e-2125735238133Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 3
5z9r_B2e-2125735238133Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g046480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3189861e-123AK318986.1 Arabidopsis thaliana AT5G55810 mRNA, complete cds, clone: RAFL21-80-L12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010412981.11e-180PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLD7LME12e-97D7LME1_ARALL; Uncharacterized protein
STRINGXP_010412981.11e-179(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48150.12e-80M-type_MADS family protein