PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g046480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 477aa MW: 53993.1 Da PI: 6.1411 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 31.5 | 2.3e-10 | 25 | 64 | 4 | 43 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 + k +r+v skRr++++ KA L+ L +a++av + s+ Csa06g046480.1 25 DTKQQRSVACSKRRQTLFSKAADLCFLSGANIAVFVTSPA 64 56889*******************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.559 | 14 | 62 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.7E-16 | 14 | 73 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.23E-20 | 15 | 82 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-15 | 16 | 107 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-10 | 27 | 73 | IPR002100 | Transcription factor, MADS-box |
Gene3D | G3DSA:3.40.50.620 | 3.9E-32 | 258 | 361 | IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
SuperFamily | SSF52374 | 1.66E-18 | 269 | 362 | No hit | No description |
Pfam | PF01467 | 3.3E-12 | 269 | 357 | IPR004821 | Cytidyltransferase-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009058 | Biological Process | biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MPSNECTMTM KRGGTKRKIE IKKRDTKQQR SVACSKRRQT LFSKAADLCF LSGANIAVFV 60 TSPAENNDVV YSFSGYSPAS EIADCYLNGK PPTTSINPQT KLGFWWEDPD LYRNCDDISE 120 LNVIEDRMMR TRKHLMDCLE KKEKTQFVSN SDHQNPSSSS LDENPKSSTP SSCDEIASFE 180 QNSTLSSFEK ICGEPSSQAT CYYDQNHTFA FEDLYRDDDG FVESLWETEK QRSDIMSIFQ 240 EPSNLRIVEV FDESIYRDKT CLVLVATRSF NPPPTFMHLR IFELARDALH SDGFHVLGDY 300 MSPVNDAYKK KGLLSAKHRL EMCNLACQSS DFVMVDPWEG SQSSYQRTSA VLSRVKTFLT 360 TNRHVQPEGN CSIISVGLLA MCCHVSVLAS YYANYKLKFY SMCFLMLESV KSHATMWLGS 420 TAIFLHSWCL DPSTVLLTIY AFLNSGYLKR QDNMFSGDKI LNESGDNIRI VDNVVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z9r_A | 2e-21 | 257 | 352 | 38 | 133 | Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 |
5z9r_B | 2e-21 | 257 | 352 | 38 | 133 | Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g046480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK318986 | 1e-123 | AK318986.1 Arabidopsis thaliana AT5G55810 mRNA, complete cds, clone: RAFL21-80-L12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010412981.1 | 1e-180 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
TrEMBL | D7LME1 | 2e-97 | D7LME1_ARALL; Uncharacterized protein | ||||
STRING | XP_010412981.1 | 1e-179 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6395 | 14 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48150.1 | 2e-80 | M-type_MADS family protein |