PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g044560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 254aa    MW: 28102.3 Da    PI: 6.2866
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g044560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-1264110354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+h  +E+rRRdriNs +  Lr+l+P++      Kl+Ka+ L  ++e +k+L
  Csa06g044560.1  64 RSHRLAEKRRRDRINSHLTALRKLVPNS-----DKLDKAALLATVIEQVKEL 110
                     68*************************8.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-1460116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.23161110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-1064110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-1464114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.34E-1264113No hitNo description
SMARTSM003534.7E-1267116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00212146220No hitNo description
Gene3DG3DSA:3.30.70.2605.2E-4152216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MENSYDSAKW SDSTTPYMVS WSLQSDSSDS DWSRFNLGFS SSSSGNFPAD DCVGGIDKAE  60
SLSRSHRLAE KRRRDRINSH LTALRKLVPN SDKLDKAALL ATVIEQVKEL KQQAAESPIF  120
QDVPTEADEV TVQPETISDF ESNTETIIFK ASFCCEDQPE AISEIIRVLT KLQLETIQAD  180
IISVGGRMRI NFILKDKNTN ETTNVAASAK ALKQSLCGAL NRITSSSSSS STSSVCRIRS  240
KRQRWFLSSH YSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g044560.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935830.0AB493583.1 Arabidopsis thaliana At2g40200 mRNA for hypothetical protein, partial cds, clone: RAAt2g40200.
GenBankAF4885860.0AF488586.1 Arabidopsis thaliana clone bHLH051 putative bHLH transcription factor mRNA, complete cds.
GenBankBT0299970.0BT029997.1 Arabidopsis thaliana At2g40200 mRNA, complete cds.
GenBankBT0300510.0BT030051.1 Arabidopsis thaliana At2g40200 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010517436.10.0PREDICTED: transcription factor bHLH51
SwissprotQ9XEF01e-167BH051_ARATH; Transcription factor bHLH51
TrEMBLA0A384L9H11e-164A0A384L9H1_ARATH; Uncharacterized protein
TrEMBLC0SV801e-164C0SV80_ARATH; Uncharacterized protein At2g40200 (Fragment)
STRINGXP_010517436.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68062542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-153bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]