PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g044030.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 390aa    MW: 43121.8 Da    PI: 8.2185
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g044030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.7e-175499147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++e de l ++v++ G+++W++I+r ++ gR++k+c++rw + 
   Csa06g044030.1 54 KGPWSPEQDEALTRLVTKCGPRNWTLISRGIP-GRSGKSCRLRWCNQ 99
                     79******************************.***********985 PP
2Myb_DNA-binding50.35.4e-16106149146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++++ eEd  ++ a++ +G++ W+ Ia+ ++ gRt++ +k++w++
   Csa06g044030.1 106 KKPFSDEEDRMIISAHAVHGNK-WAVIAKLLP-GRTDNAIKNHWNS 149
                      689*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.31349100IPR017930Myb domain
SuperFamilySSF466892.08E-3051147IPR009057Homeodomain-like
SMARTSM007172.4E-1453102IPR001005SANT/Myb domain
PfamPF002491.7E-155499IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2355107IPR009057Homeodomain-like
CDDcd001671.51E-135698No hitNo description
PROSITE profilePS5129424.176101155IPR017930Myb domain
SMARTSM007178.4E-16105153IPR001005SANT/Myb domain
PfamPF002491.5E-14106149IPR001005SANT/Myb domain
CDDcd001675.25E-12108148No hitNo description
Gene3DG3DSA:1.10.10.609.7E-24108154IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MNAATYYKTP ELMPSVNLPT GCDGTEDAIN AAVEEELAEL AKSDSNGGGR SKVKGPWSPE  60
QDEALTRLVT KCGPRNWTLI SRGIPGRSGK SCRLRWCNQL DPCLKKKPFS DEEDRMIISA  120
HAVHGNKWAV IAKLLPGRTD NAIKNHWNSA LRRKPAGLWM DHHHQGMSNT DIYHMQPSKV  180
RKISNASPRE HLPREETNSF TPPVLLNEDK MDDVANEPPR EKVKSKPDVY RPVARMGAFS  240
ICKQGYMNHH MAPCEGPLVQ ASRPGSLAAK FLQSLCYEPI VPSKCGRGCC NHPDNKTLPS  300
SSKSVLGPEF VDYEEHSSAE LDQELISIST DLNNIAWIQS GLNNNNYLKE AEQSLKAGDQ  360
FHRAKFTGMV NNGVSVSSQM LRPDVRALS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-38531543104MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-38531543104C-Myb DNA-Binding Domain
1msf_C3e-38531543104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g044030.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010517362.10.0PREDICTED: uncharacterized protein LOC104792825
SwissprotO041921e-179MYB25_ARATH; Transcription factor MYB25
TrEMBLR0HPT00.0R0HPT0_9BRAS; Uncharacterized protein
STRINGXP_010517362.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39880.11e-174myb domain protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]