PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g042820.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NF-YB

Protein Properties

Length: 144aa MW: 15325.1 Da PI: 4.5966

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g042820.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	181.8	5.8e-57	22	119	1	98
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdr+lPian+srimk++lP n+ki+kdak+tvqecvsefisf+tseasdkcq+ekrkt+ngddllwa+atlGfedy+eplk+yl++yreleg Csa06g042820.1 22 VREQDRYLPIANISRIMKRALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEG 116 69********************************************************************************************* PP NF-YB 96 ekk 98 ++k Csa06g042820.1 117 DNK 119 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.7E-53	20	131	IPR009072	Histone-fold
SuperFamily	SSF47113	2.64E-41	25	137	IPR009072	Histone-fold
Pfam	PF00808	3.4E-27	28	92	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.8E-21	56	74	No hit	No description
PROSITE pattern	PS00685	0	59	75	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	4.8E-21	75	93	No hit	No description
PRINTS	PR00615	4.8E-21	94	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MADINTPSSP AGDGGESGGG SVREQDRYLP IANISRIMKR ALPPNGKIGK DAKDTVQECV 60 SEFISFITSE ASDKCQKEKR KTVNGDDLLW AMATLGFEDY LEPLKIYLAR YRELEGDNKG 120 SGKSGDGSNR DAGGAVPGEE LPV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-48	22	113	1	92	Transcription factor HapC (Eurofung)
4g92_B	2e-48	22	113	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g042820.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK318866	1e-170	AK318866.1 Arabidopsis thaliana AT2G38880 mRNA, complete cds, clone: RAFL17-11-H19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010517210.1	1e-100	PREDICTED: nuclear transcription factor Y subunit B-1
Refseq	XP_010517211.1	1e-100	PREDICTED: nuclear transcription factor Y subunit B-1
Swissprot	Q9SLG0	1e-92	NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBL	Q3EBK1	6e-91	Q3EBK1_ARATH; AT2G38880 protein
STRING	XP_010517210.1	1e-99	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1480	27	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.3	3e-74	nuclear factor Y, subunit B1