PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g040410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GRAS | ||||||||
Protein Properties | Length: 725aa MW: 81505.5 Da PI: 6.5186 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 377.3 | 1.9e-115 | 350 | 719 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+av+++d ++a +lL++++ +++p gd +qRla++f+++L+arla+++s++yk + +++ s + +l+a++lf ++P+ k+s+ Csa06g040410.1 350 LRSLLIHCAQAVAADDRRCAGQLLKQIRLHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRS---AAAVLKAHQLFLACCPFRKLSY 441 689***************************************************************9999...999******************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 +++N++I + v++++rvH+iDf+i +G+QWp+L++ ++ g+p++RiTg++ p++g ++++eetg+rLa +A+++gvpfe+++ +ak++++ Csa06g040410.1 442 FITNKTIRDLVDNSQRVHVIDFGILYGFQWPTLIHRFSM--YGSPMVRITGIEFPQPGfrPAQRVEETGQRLAAYAKHFGVPFEYKA-IAKKWDA 533 **************************************9..8***************9*****************************.7****** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++le+L+++++E+++Vn+ ++ ++l+desv++es+rd+vL+l+ +++P+++v+ + +n++ F++rf eal ++s++fd+le+ +pre+e r+ Csa06g040410.1 534 IQLEDLDIDRDEVIIVNCLYRAENLHDESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPREDEGRM 628 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++E e++gre+ nv+aceg er+er et+++W+ r +++G+ +vp++ +++k+a + +++++ + + +++++ +l++gWk+r+++++S+W+ Csa06g040410.1 629 FLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVPFDPSIMKTALHKVNTFYHKDFVIDQDNRWLLQGWKGRTVMALSVWK 719 **************************************************************889*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.731 | 324 | 699 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.7E-113 | 350 | 719 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 725 aa Download sequence Send to blast |
MITEPGLTGI SAAITRNRLP GLPDQSTSLL PNHTFTPVSL YDGFNYNLSS SDHRNPAENS 60 VFLREVVVGE EEDPADDFDF SDAVLGYISQ MLNEEDMDDK VCMLQESLDL EAAERSLYEA 120 IGKKYPPSPE RNLVASFSER NGENLDRVVP VNYTGCDCIG FGNGGIKPLS SGGFTFDFRN 180 PQSLCSSVLS VPQSNGFEID ESSSKKSLYS DSNRESHQSV WLFRRGIEEA SRLLPEQNEL 240 IVNFREEICM SRGRKNSSRD EISVEEERSS KLPAVFGEDI LRSDVVDKIL VHVPGEESMK 300 EFDALREVLK KGVEKKKASV AQGGKRRARG RGRGRGGGGG QNGKKEVVDL RSLLIHCAQA 360 VAADDRRCAG QLLKQIRLHS TPFGDGNQRL AHCFANGLEA RLAGTGSQIY KGIVSKPRSA 420 AAVLKAHQLF LACCPFRKLS YFITNKTIRD LVDNSQRVHV IDFGILYGFQ WPTLIHRFSM 480 YGSPMVRITG IEFPQPGFRP AQRVEETGQR LAAYAKHFGV PFEYKAIAKK WDAIQLEDLD 540 IDRDEVIIVN CLYRAENLHD ESVKVESCRD TVLNLIGKIN PDLFVFGIVN GAYNAPFFVT 600 RFREALFHFS SIFDMLETIV PREDEGRMFL EMEVFGREAL NVIACEGWER VERPETYKQW 660 HVRAMRSGLV QVPFDPSIMK TALHKVNTFY HKDFVIDQDN RWLLQGWKGR TVMALSVWKP 720 ESKA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 9e-43 | 356 | 722 | 24 | 381 | Protein SCARECROW |
5b3h_D | 9e-43 | 356 | 722 | 24 | 381 | Protein SCARECROW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 326 | 335 | RARGRGRGRG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g040410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004684 | 0.0 | AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010517037.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | R0HVC0 | 0.0 | R0HVC0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010517037.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |