PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g039740.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NF-YB

Protein Properties

Length: 114aa MW: 12883.7 Da PI: 8.7198

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g039740.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	176.5	2.6e-55	23	114	1	92
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 vreqdrflPian+srimk+ lPan+ki+kdake+vqecvsefisf+tseasdkcqrekrktingddllwa+atlGfe+y+eplk+yl++yre Csa06g039740.1 23 VREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEEYIEPLKLYLMRYRE 114 69*****************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.2E-50	21	114	IPR009072	Histone-fold
SuperFamily	SSF47113	9.32E-38	26	114	IPR009072	Histone-fold
Pfam	PF00808	7.3E-28	29	93	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.5E-21	57	75	No hit	No description
PROSITE pattern	PS00685	0	60	76	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.5E-21	76	94	No hit	No description
PRINTS	PR00615	1.5E-21	95	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
AKSPGGGGRH ESGGDQSPRS LHVREQDRFL PIANISRIMK RGLPANGKIA KDAKEIVQEC 60 VSEFISFITS EASDKCQREK RKTINGDDLL WAMATLGFEE YIEPLKLYLM RYRE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	5e-48	21	114	1	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	5e-48	21	114	1	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g039740.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317223	1e-137	AK317223.1 Arabidopsis thaliana AT2G37060 mRNA, partial cds, clone: RAFL22-38-O10.
GenBank	AY070477	1e-137	AY070477.1 Arabidopsis thaliana At2g37060/T2N18.18 mRNA, complete cds.
GenBank	AY091673	1e-137	AY091673.1 Arabidopsis thaliana At2g37060/T2N18.18 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010509397.1	1e-80	PREDICTED: nuclear transcription factor Y subunit B-8
Refseq	XP_010509398.1	1e-80	PREDICTED: nuclear transcription factor Y subunit B-8
Refseq	XP_010516951.1	1e-80	PREDICTED: nuclear transcription factor Y subunit B-8
Refseq	XP_019101277.1	1e-80	PREDICTED: nuclear transcription factor Y subunit B-8
Swissprot	Q8VYK4	4e-78	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	R0HVN6	1e-77	R0HVN6_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010509397.1	4e-80	(Camelina sativa)
STRING	XP_010516951.1	4e-80	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1480	27	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	2e-73	nuclear factor Y, subunit B8

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]