PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g039230.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HD-ZIP

Protein Properties

Length: 180aa MW: 20918.7 Da PI: 9.8275

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g039230.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.8	8.9e-19	72	127	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +k+ ++t+eql+ Le+ F+++ +++ +++ +L+k+lgL+ rq+ vWFqNr+a++k+ Csa06g039230.1 72 KKKKKMTSEQLKFLERSFQEDIKLNPDRKMKLSKELGLQPRQIAVWFQNRKARWKN 127 78999*************************************************95 PP
2	HD-ZIP_I/II	111.9	4.1e-36	72	163	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+++++eq+k+LE+sF+e+ kL+p+rK++l++eLglqprq+avWFqnr+AR+k+kqlE+ ye+L++++d +++e+e L++e +L++ ++ Csa06g039230.1 72 KKKKKMTSEQLKFLERSFQEDIKLNPDRKMKLSKELGLQPRQIAVWFQNRKARWKNKQLEHLYESLRQEFDVVSREKELLQEELIQLKSMIR 163 59**************************************************************************************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.56E-20	56	130	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.459	68	128	IPR001356	Homeobox domain
SMART	SM00389	7.5E-18	70	132	IPR001356	Homeobox domain
Pfam	PF00046	4.0E-16	72	127	IPR001356	Homeobox domain
CDD	cd00086	9.34E-15	78	129	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.2E-20	78	128	IPR009057	Homeodomain-like
PRINTS	PR00031	7.3E-5	99	108	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	103	126	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.3E-5	108	124	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MEYWSSSFID GASSSNFISP FYNLDRFPGN QDNRCISSGT MVGAQQGMLH VPLQMVESGY 60 GEESNNNNGQ QKKKKKMTSE QLKFLERSFQ EDIKLNPDRK MKLSKELGLQ PRQIAVWFQN 120 RKARWKNKQL EHLYESLRQE FDVVSREKEL LQEELIQLKS MIRENGSNKK MQNWGKACS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00049	PBM	Transfer from AT2G36610	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g039230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ056569	1e-99	DQ056569.1 Arabidopsis thaliana homeobox-leucine zipper family protein (At2g36610) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010516885.1	1e-130	PREDICTED: homeobox-leucine zipper protein ATHB-22-like
Swissprot	Q4PSR7	1e-109	ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22
TrEMBL	R0HRP8	1e-118	R0HRP8_9BRAS; Uncharacterized protein
STRING	XP_010516885.1	1e-130	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36610.1	4e-79	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]