PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g039080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 530aa    MW: 56966.5 Da    PI: 5.7357
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g039080.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-16358407355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++++ +Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  Csa06g039080.1 358 YRGVRQRRNSDKWVSEIREPR----KpNRIWLGTFSTPEMAAIAYDVAALALKG 407
                     9******************94....478***********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF515692.83E-1463347No hitNo description
Gene3DG3DSA:3.20.20.704.8E-1683340IPR013785Aldolase-type TIM barrel
CDDcd0094809337No hitNo description
PfamPF002745.2E-17011344IPR000741Fructose-bisphosphate aldolase, class-I
PROSITE patternPS001580217227IPR029768Fructose-bisphosphate aldolase class-I active site
PROSITE profilePS5103221.509357415IPR001471AP2/ERF domain
SMARTSM003807.0E-32357421IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-27357416IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-19357417IPR016177DNA-binding domain
CDDcd000181.46E-26358417No hitNo description
PRINTSPR003673.0E-7358369IPR001471AP2/ERF domain
PfamPF008473.7E-10358407IPR001471AP2/ERF domain
PRINTSPR003673.0E-7397417IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006096Biological Processglycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004332Molecular Functionfructose-bisphosphate aldolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MSCFTTKFAD ELIANAAYIG TPGKGILAAD ESTGTIGKRL ASINVENVES NRRALRELLF  60
TTPGALPCLS GVILFEETLY QKSSNGTPFV EMLKSAGVLP GIKVDKGTVE LAGTNGETTT  120
QGLDGLGERC KKYYEAGARF AKWRAVLKIG QNEPSELAIH ENAYGLARYA VICQENGLVP  180
IVEPEILVDG SHDIHKCAAV TERVLAACYK ALSDHHVLLE GTLLKPNMVT PGSESAKVAP  240
EVIAEHTVRA LQRTVPAAVP AIVFLSGGQS EEEATRNLNA MNQLKTKKPW FLSFSFGRAL  300
QQSTLKTWGG KEENVKKAQE AFLVRCKANS EATLGAYKGD AKLGEGTSKD NGGRHPMYRG  360
VRQRRNSDKW VSEIREPRKP NRIWLGTFST PEMAAIAYDV AALALKGTQA ELNFPNSVSS  420
LPVPASMSPG DIQAAAASAA AAFGAARDAI VMANNNSQTS GVAHVNDSYN DSTNMNEFMD  480
DDLVFDMPNV LMNMAEGMLL SPPRPSAFDA AYYDVDGFTG GDDYLWNFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ado_A1e-14343497354ALDOLASE
1ado_B1e-14343497354ALDOLASE
1ado_C1e-14343497354ALDOLASE
1ado_D1e-14343497354ALDOLASE
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFructose-bisphosphate aldolase that plays a key role in glycolysis and gluconeogenesis (PubMed:21782461). Associates with GAPC1 to the outer mitochondrial membrane, in a redox-dependent manner, leading to binding and bundling of actin. Actin binding and bundling occurs under oxidizing conditions and is reversible under reducing conditions. May be part of a redox-dependent retrograde signal transduction network for adaptation upon oxidative stress (PubMed:23316205). {ECO:0000269|PubMed:21782461, ECO:0000269|PubMed:23316205}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g039080.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By glucose, fructose and sucrose (PubMed:22561114). Induced by abiotic stresses (PubMed:22561114). Induced by cadmium (PubMed:16502469). {ECO:0000269|PubMed:16502469, ECO:0000269|PubMed:22561114}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2268420.0AK226842.1 Arabidopsis thaliana mRNA for putative fructose bisphosphate aldolase, complete cds, clone: RAFL08-13-B03.
GenBankAY0348970.0AY034897.1 Arabidopsis thaliana putative fructose bisphosphate aldolase (At2g36460) mRNA, complete cds.
GenBankAY0630440.0AY063044.1 Arabidopsis thaliana putative fructose bisphosphate aldolase (At2g36460) mRNA, complete cds.
GenBankAY0851140.0AY085114.1 Arabidopsis thaliana clone 13024 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516868.10.0PREDICTED: fructose-bisphosphate aldolase 6, cytosolic
SwissprotQ9SJQ90.0ALFC6_ARATH; Fructose-bisphosphate aldolase 6, cytosolic
TrEMBLA0A0D3C4L40.0A0A0D3C4L4_BRAOL; Fructose-bisphosphate aldolase
STRINGBo4g186300.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.16e-91ERF family protein
Publications ? help Back to Top
  1. Giegé P, et al.
    Enzymes of glycolysis are functionally associated with the mitochondrion in Arabidopsis cells.
    Plant Cell, 2003. 15(9): p. 2140-51
    [PMID:12953116]
  2. Pan D, et al.
    PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis.
    BMC Bioinformatics, 2003. 4: p. 56
    [PMID:14604444]
  3. Wienkoop S, et al.
    Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins.
    Rapid Commun. Mass Spectrom., 2004. 18(6): p. 643-50
    [PMID:15052571]
  4. Ahlfors R, et al.
    Arabidopsis RADICAL-INDUCED CELL DEATH1 belongs to the WWE protein-protein interaction domain protein family and modulates abscisic acid, ethylene, and methyl jasmonate responses.
    Plant Cell, 2004. 16(7): p. 1925-37
    [PMID:15208394]
  5. Loeffler C, et al.
    B1-phytoprostanes trigger plant defense and detoxification responses.
    Plant Physiol., 2005. 137(1): p. 328-40
    [PMID:15618427]
  6. Job C,Rajjou L,Lovigny Y,Belghazi M,Job D
    Patterns of protein oxidation in Arabidopsis seeds and during germination.
    Plant Physiol., 2005. 138(2): p. 790-802
    [PMID:15908592]
  7. Rajjou L, et al.
    Proteomic investigation of the effect of salicylic acid on Arabidopsis seed germination and establishment of early defense mechanisms.
    Plant Physiol., 2006. 141(3): p. 910-23
    [PMID:16679420]
  8. Rius SP,Casati P,Iglesias AA,Gomez-Casati DF
    Characterization of an Arabidopsis thaliana mutant lacking a cytosolic non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase.
    Plant Mol. Biol., 2006. 61(6): p. 945-57
    [PMID:16927206]
  9. Chibani K, et al.
    Proteomic analysis of seed dormancy in Arabidopsis.
    Plant Physiol., 2006. 142(4): p. 1493-510
    [PMID:17028149]
  10. Marmagne A, et al.
    A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome.
    Mol. Cell Proteomics, 2007. 6(11): p. 1980-96
    [PMID:17644812]
  11. Espagne C,Martinez A,Valot B,Meinnel T,Giglione C
    Alternative and effective proteomic analysis in Arabidopsis.
    Proteomics, 2007. 7(20): p. 3788-99
    [PMID:17828791]
  12. Jiang Y,Yang B,Harris NS,Deyholos MK
    Comparative proteomic analysis of NaCl stress-responsive proteins in Arabidopsis roots.
    J. Exp. Bot., 2007. 58(13): p. 3591-607
    [PMID:17916636]
  13. Tan YF,O'Toole N,Taylor NL,Millar AH
    Divalent metal ions in plant mitochondria and their role in interactions with proteins and oxidative stress-induced damage to respiratory function.
    Plant Physiol., 2010. 152(2): p. 747-61
    [PMID:20018591]
  14. Hajduch M, et al.
    Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression.
    Plant Physiol., 2010. 152(4): p. 2078-87
    [PMID:20118269]
  15. Marchand CH, et al.
    Thioredoxin targets in Arabidopsis roots.
    Proteomics, 2010. 10(13): p. 2418-28
    [PMID:20405473]
  16. van der Linde K, et al.
    Regulation of plant cytosolic aldolase functions by redox-modifications.
    Plant Physiol. Biochem., 2011. 49(9): p. 946-57
    [PMID:21782461]
  17. Lu W, et al.
    Identification and characterization of fructose 1,6-bisphosphate aldolase genes in Arabidopsis reveal a gene family with diverse responses to abiotic stresses.
    Gene, 2012. 503(1): p. 65-74
    [PMID:22561114]
  18. Wojtera-Kwiczor J, et al.
    Transfer of a Redox-Signal through the Cytosol by Redox-Dependent Microcompartmentation of Glycolytic Enzymes at Mitochondria and Actin Cytoskeleton.
    Front Plant Sci, 2012. 3: p. 284
    [PMID:23316205]
  19. Černý M, et al.
    Proteome and metabolome profiling of cytokinin action in Arabidopsis identifying both distinct and similar responses to cytokinin down- and up-regulation.
    J. Exp. Bot., 2013. 64(14): p. 4193-206
    [PMID:24064926]
  20. Nakamura H, et al.
    Genomic structure of the rice aldolase isozyme C-1 gene and its regulation through a Ca 2+ -mediated protein kinase-phosphatase pathway.
    Plant Mol. Biol., 1996. 30(2): p. 381-5
    [PMID:8616263]