PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g038560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HB-other | ||||||||
Protein Properties | Length: 260aa MW: 28814.1 Da PI: 6.094 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 20.3 | 9.3e-07 | 2 | 23 | 33 | 54 |
HHHHCTS-HHHHHHHHHHHHHH CS Homeobox 33 LAkklgLterqVkvWFqNrRak 54 LAk++gLt +qV++WF N R + Csa06g038560.1 2 LAKQTGLTRSQVSNWFINARVR 23 9*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-14 | 1 | 34 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.69E-9 | 1 | 34 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.171 | 1 | 27 | IPR001356 | Homeobox domain |
Pfam | PF05920 | 9.7E-9 | 1 | 23 | IPR008422 | Homeobox KN domain |
CDD | cd00086 | 1.98E-7 | 2 | 27 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MLAKQTGLTR SQVSNWFINA RVRLWKPMVE EMYMEEMKEQ GKNMGSMEKN PLDQSNEDSA 60 SKSTSNQEKS PMADTYHMNP NHNGDLEGVT GMQGSPKRLR TSEETMMQPI NADFSSNEKL 120 TMKILEERQG IRSDGGYPFM GNFGQYQMDE MSRFDVVSDQ ELMAQRYSGN NNGVSLTLGL 180 PHCDSLSSTH HQGFMQTHHG NPIGRRVKIG ETEEYGAAAI NGGGSATNAH SSAAAAAAYN 240 GMNIQNQKRY VAQLLPDFVA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g038560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227272 | 0.0 | AK227272.1 Arabidopsis thaliana mRNA for putative homeodomain transcription factor, complete cds, clone: RAFL11-09-C20. | |||
GenBank | AY072175 | 0.0 | AY072175.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds. | |||
GenBank | AY096548 | 0.0 | AY096548.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds. | |||
GenBank | AY099854 | 0.0 | AY099854.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds. | |||
GenBank | BT008422 | 0.0 | BT008422.1 Arabidopsis thaliana At2g35940 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010509532.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_010516801.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_019101291.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 1e-163 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | R0HRR2 | 1e-165 | R0HRR2_9BRAS; Uncharacterized protein | ||||
STRING | XP_010509532.1 | 0.0 | (Camelina sativa) | ||||
STRING | XP_010516801.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21794 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-156 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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