PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g038040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 247aa MW: 27069.1 Da PI: 10.7725 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 265.4 | 3.1e-81 | 47 | 246 | 97 | 301 |
GAGA_bind 97 vgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaek 191 ++ ++++t+ id +q +q ++ + ++ + ++p++ + e+ ++k + +++ pk+ k k ++kk+++s+k++k+ s +++k+ek Csa06g038040.1 47 HSHIAVPKTTGIDLSQV---SQANPAEGVMVPQSRSFHPPTTIDYRNGVETVEQK-STNQSPPKALKPKTPRKKRSASNKSKKTLSI-PETKREK 136 44567888888987777...44444333366777777777665555544444443.4555667777777777777888888888886.699**** PP GAGA_bind 192 ksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLk 286 k++d++++ s+D+s++P+PvCsCtG++r+CYkWG+GGWqS+CCt++iS+yPLP+st+r+gaR+agrKmS+ga+ klL++La+eGy+ls+pvDLk Csa06g038040.1 137 KNLDINIDISSFDTSGVPPPVCSCTGVSRVCYKWGMGGWQSSCCTISISTYPLPMSTTRPGARLAGRKMSNGAYVKLLARLAGEGYSLSHPVDLK 231 *********************************************************************************************** PP GAGA_bind 287 dhWAkHGtnkfvtir 301 +hWA+HGtnkfvt + Csa06g038040.1 232 NHWARHGTNKFVTFK 246 *************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 7.1E-98 | 17 | 246 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 2.6E-69 | 74 | 246 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
ERQRERVISP LKLAIKMNPF PSQNLMLSAT NANKDAALLI SNAHWFHSHI AVPKTTGIDL 60 SQVSQANPAE GVMVPQSRSF HPPTTIDYRN GVETVEQKST NQSPPKALKP KTPRKKRSAS 120 NKSKKTLSIP ETKREKKNLD INIDISSFDT SGVPPPVCSC TGVSRVCYKW GMGGWQSSCC 180 TISISTYPLP MSTTRPGARL AGRKMSNGAY VKLLARLAGE GYSLSHPVDL KNHWARHGTN 240 KFVTFK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g038040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU089961 | 0.0 | EU089961.1 Arabidopsis arenosa GAGA-binding transcriptional activator (BBR/BPC7) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010516733.1 | 1e-172 | PREDICTED: protein BASIC PENTACYSTEINE7 | ||||
Swissprot | O82286 | 1e-139 | BPC7_ARATH; Protein BASIC PENTACYSTEINE7 | ||||
TrEMBL | A0A178W000 | 1e-145 | A0A178W000_ARATH; BPC7 | ||||
STRING | XP_010516733.1 | 1e-172 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13674 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35550.1 | 1e-141 | basic pentacysteine 7 |