PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g037300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 292aa MW: 33364.8 Da PI: 5.2071 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.1 | 1.3e-07 | 169 | 213 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P +Kl+ ae+ + A +Y+k Lq Csa06g037300.1 169 SIAARERRRRIADKTHELGKLIPGG-----QKLNTAEMFQSAAKYVKFLQ 213 567899*****************86.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.36E-10 | 161 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.633 | 163 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-9 | 166 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.7E-9 | 169 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-5 | 169 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.24E-4 | 185 | 216 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MSMDCLSYFF NYDPPVQLQD CFLPDMDMII PESDSFFLES QPQLQFHHPL LQEEAPSQTY 60 FDPFCDQFLS PQEISLPNPK TKIFSETHDL DSFLPAPKRQ KLVNSSYHCN THNHFQSHNP 120 SFFDPFGDLE FVPEASSFPE FRVPDFSLEF KVGRGAQDDT KKPTLSSQSI AARERRRRIA 180 DKTHELGKLI PGGQKLNTAE MFQSAAKYVK FLQSQVGILQ LMQTTKKGSS NVQSETQVLL 240 ESQAIQEKLS TEEVCLVPCE MVQDLTAQET ILRNPKIYRE INKLLSRDLT K* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g037300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY234412 | 0.0 | AY234412.1 Arabidopsis thaliana hypothetical protein (At2g34820) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010516643.1 | 0.0 | PREDICTED: transcription factor bHLH53-like | ||||
Swissprot | Q84RD0 | 1e-175 | BH053_ARATH; Transcription factor bHLH53 | ||||
TrEMBL | D7LH48 | 1e-177 | D7LH48_ARALL; Predicted protein | ||||
STRING | XP_010516643.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4547 | 25 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34820.1 | 1e-166 | bHLH family protein |
Publications ? help Back to Top | |||
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