PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g037190.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HD-ZIP

Protein Properties

Length: 850aa MW: 92911.6 Da PI: 6.4262

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g037190.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.4e-18	20	78	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Csa06g037190.1 20 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78 5678*****************************************************97 PP
2	START	191.1	5.4e-60	169	377	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aeea++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ ++tl vi g g+++l+ Csa06g037190.1 169 IAEEALAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAISRNCSGIAARACGLVSLEPM-KVAEILKDRPSWLRDCRCVDTLSVIPAGngGTIELI 262 799*****************************************************.8888888888*************999** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++++a+++l++ Rdf+++Ry+ +l++g++v++++S++s + p+ sss+vRae++pSg+li+p+++g+s +++v+hvdl+++++++++r+l+ Csa06g037190.1 263 YTQMYAPTTLAAaRDFWTLRYSTCLEDGSYVVCERSLTSATGGPTgppSSSFVRAEMRPSGFLIRPCEGGGSILHIVDHVDLDAWSVPEVMRPLY 357 *************************************9999999******************************************* PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s+ + ++k++va+l++ ++ Csa06g037190.1 358 ESSKILAQKMTVAALRHVRQ 377 *************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.321	15	79	IPR001356	Homeobox domain
SMART	SM00389	5.7E-15	17	83	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-17	19	83	IPR009057	Homeodomain-like
CDD	cd00086	4.08E-16	20	80	No hit	No description
Pfam	PF00046	6.4E-16	21	78	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.0E-18	22	78	IPR009057	Homeodomain-like
CDD	cd14686	5.46E-6	72	111	No hit	No description
PROSITE profile	PS50848	26.98	159	387	IPR002913	START domain
CDD	cd08875	1.17E-75	163	379	No hit	No description
Gene3D	G3DSA:3.30.530.20	2.2E-22	167	373	IPR023393	START-like domain
SuperFamily	SSF55961	3.57E-36	168	380	No hit	No description
SMART	SM00234	1.1E-63	168	378	IPR002913	START domain
Pfam	PF01852	2.9E-57	169	377	IPR002913	START domain
SuperFamily	SSF55961	1.15E-5	416	497	No hit	No description
SuperFamily	SSF55961	1.15E-5	529	604	No hit	No description
Pfam	PF08670	3.3E-47	701	848	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence Send to blast
MMMVHTMNRE SPDKGLDSGK YVRYTPEQVE ALERVYTECP KPSSLRRQQL IRECPILSNI 60 EPKQIKVWFQ NRRCREKQRK EAARLQTVNR KLNAMNKLLM EENDRLQKQV SHLVYENGHM 120 KHQLHTASGT TTDNSCESVV VSGQQHQQQN PNPQHLQRDA NNPAGLLSIA EEALAEFLSK 180 ATGTAVDWVQ MIGMKPGPDS IGIVAISRNC SGIAARACGL VSLEPMKVAE ILKDRPSWLR 240 DCRCVDTLSV IPAGNGGTIE LIYTQMYAPT TLAAARDFWT LRYSTCLEDG SYVVCERSLT 300 SATGGPTGPP SSSFVRAEMR PSGFLIRPCE GGGSILHIVD HVDLDAWSVP EVMRPLYESS 360 KILAQKMTVA ALRHVRQIAQ ETSGEVQYGG GRQPAVLRTF SQRLCRGFND AVNGFVDDGW 420 TPMGSDGAED ITVMINLSPG KFGGAQYGSS FLPSFGSGVL CAKASMLLQN VPPAVLIRFL 480 REHRSEWADY GVDAYAAASL RASPFAVPCA RAGGFPSNQV ILPLAQTVEH EESLEVVRLE 540 GHAYSPEDMG LARDMYLLQL CSGVDENVVG GCAQLVFAPI DESFADDAPL LPSGFRVIPL 600 EHKSTPNGAS ANRTLDLASA LEGSTRQAGE ADPNGCNFRS VITIAFQYTF DNHSRDNVAS 660 MARQYVRSIV GSIQRVSLAI APRPGSSISP ISVPTSPEAL TLVRWISRSY SLHTGADLFV 720 FGSDSRTSGD TLLHQLWNHT DAILCCSLKT NASPVFTFAN QTGLDMLETT LVALQDIMLD 780 KTLNESGRKA LCSEFPKIMQ QGYAHLPAGV CASSMGRMVS YEQATVWKVL EDDESNHCLA 840 FMFGNWSFV*

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence Send to blast

MMMVHTMNRE SPDKGLDSGK YVRYTPEQVE ALERVYTECP KPSSLRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK EAARLQTVNR KLNAMNKLLM EENDRLQKQV SHLVYENGHM  120
KHQLHTASGT TTDNSCESVV VSGQQHQQQN PNPQHLQRDA NNPAGLLSIA EEALAEFLSK  180
ATGTAVDWVQ MIGMKPGPDS IGIVAISRNC SGIAARACGL VSLEPMKVAE ILKDRPSWLR  240
DCRCVDTLSV IPAGNGGTIE LIYTQMYAPT TLAAARDFWT LRYSTCLEDG SYVVCERSLT  300
SATGGPTGPP SSSFVRAEMR PSGFLIRPCE GGGSILHIVD HVDLDAWSVP EVMRPLYESS  360
KILAQKMTVA ALRHVRQIAQ ETSGEVQYGG GRQPAVLRTF SQRLCRGFND AVNGFVDDGW  420
TPMGSDGAED ITVMINLSPG KFGGAQYGSS FLPSFGSGVL CAKASMLLQN VPPAVLIRFL  480
REHRSEWADY GVDAYAAASL RASPFAVPCA RAGGFPSNQV ILPLAQTVEH EESLEVVRLE  540
GHAYSPEDMG LARDMYLLQL CSGVDENVVG GCAQLVFAPI DESFADDAPL LPSGFRVIPL  600
EHKSTPNGAS ANRTLDLASA LEGSTRQAGE ADPNGCNFRS VITIAFQYTF DNHSRDNVAS  660
MARQYVRSIV GSIQRVSLAI APRPGSSISP ISVPTSPEAL TLVRWISRSY SLHTGADLFV  720
FGSDSRTSGD TLLHQLWNHT DAILCCSLKT NASPVFTFAN QTGLDMLETT LVALQDIMLD  780
KTLNESGRKA LCSEFPKIMQ QGYAHLPAGV CASSMGRMVS YEQATVWKVL EDDESNHCLA  840
FMFGNWSFV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269\|PubMed:11395776, ECO:0000269\|PubMed:15328016, ECO:0000269\|PubMed:15598805}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g037190.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by miR165 and miR166. {ECO:0000269\|PubMed:14999284, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ441291	0.0	AJ441291.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 14 (ATHB-14 gene).
GenBank	AY099791	0.0	AY099791.1 Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds.
GenBank	BT000335	0.0	BT000335.1 Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010516626.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-14-like
Swissprot	O04291	0.0	ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBL	D7LH38	0.0	D7LH38_ARALL; Uncharacterized protein
STRING	XP_010516626.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4256	26	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34710.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Jia X, et al. Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic. Plant Sci., 2015. 233: p. 11-21 [PMID:25711809] Müller CJ, et al. PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis. Plant Physiol., 2016. 170(2): p. 956-70 [PMID:26637548] Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Kim ES, et al. HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots. Physiol Plant, 2016. 157(2): p. 221-33 [PMID:26968317] Husbands AY,Aggarwal V,Ha T,Timmermans MC In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes. Plant Cell, 2016. 28(8): p. 1783-94 [PMID:27385814] Di Ruocco G, et al. Differential spatial distribution of miR165/6 determines variability in plant root anatomy. Development, 2018. [PMID:29158439] Wójcik AM,Nodine MD,Gaj MD miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis. Front Plant Sci, 2017. 8: p. 2024 [PMID:29321785] Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana. Plant Cell Physiol., 2018. 59(5): p. 1017-1026 [PMID:29462472]