PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g031690.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 497aa    MW: 55698.6 Da    PI: 5.8974
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g031690.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.9e-1677129155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++ +hn+ Er RR++iNs f+ Lr++lP  +   +skKls  +++++  +YI +Lq
  Csa06g031690.2  77 KKLNHNASERDRRKKINSLFSSLRSCLPAsD---QSKKLSIPATVTRSLNYIPELQ 129
                     6789*************************66...*******************998 PP
2HLH46.37.8e-15309361155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++ +hn+ Er RR++iN  f+ Lr++lP  +   +skKls  e++ +  +YI +Lq
  Csa06g031690.2 309 KKLNHNASERDRRKKINYLFSSLRSCLPAsD---QSKKLSIPETVSRSLKYIPELQ 361
                     6789*************************66...*******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.62176128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1477145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-1377129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.50E-1477133No hitNo description
SuperFamilySSF474595.5E-1677146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1282134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.672308360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-14309374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-12309361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-16309377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.93E-14309365No hitNo description
SMARTSM003534.5E-12314366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MCALVPPLFP NFGWPSTGEY NSYYLTGDNL NNGGFLDFPV PEETYGVVTA VAHNQNSFGG  60
SVSSEGNEIG NNPVVIKKLN HNASERDRRK KINSLFSSLR SCLPASDQSK KLSIPATVTR  120
SLNYIPELQD QVKKLIKNKE ELLMQVSGQI NIEDYVKPQP KAVASYVSTV SATRLGDNEV  180
MVQISSSKIY NFPISNVLSG LEEDGFVLVD MSSSRSQGER LFYTLHLQMD KIENYELNCE  240
ALTPSPLFPN FGWPSKYESY YGAGDNLDNG PFLDFPVPQT YGVTHHQNSL GVSVSSEGNE  300
IDNNPVVVKK LNHNASERDR RKKINYLFSS LRSCLPASDQ SKKLSIPETV SRSLKYIPEL  360
QRQVKKLIQK KEELLVRVSG QRDFEQYDKQ QPKAVASYLS TVSAARLGEN EVMVQISSSK  420
THNFSISNVL SGLEEDGFVL VDISSSRSQG ERLFYTLHLQ VEKVDDYHKI NCEELSERML  480
YLYEKYENSL DSSQLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g031690.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by OBP3, auxin and salicylic acid (SA). Repressed by jasmonic acid (JA), UV LIGHT, and heat treatments. Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:12887587, ECO:0000269|PubMed:17516080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885760.0AF488576.1 Arabidopsis thaliana clone bHLH038 putative bHLH transcription factor mRNA, complete cds.
GenBankAK2215420.0AK221542.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL07-73-C01.
GenBankBT0264190.0BT026419.1 Arabidopsis thaliana At3g56970 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010412809.10.0PREDICTED: transcription factor ORG2
SwissprotQ9M1K11e-154ORG2_ARATH; Transcription factor ORG2
TrEMBLR0HP721e-153R0HP72_9BRAS; Uncharacterized protein
STRINGXP_010412809.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-157bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Matsuoka K, et al.
    Gibberellin-induced expression of Fe uptake-related genes in Arabidopsis.
    Plant Cell Physiol., 2014. 55(1): p. 87-98
    [PMID:24192296]
  3. Li X,Zhang H,Ai Q,Liang G,Yu D
    Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2478-93
    [PMID:26921305]
  4. Shen C, et al.
    Involvement of endogenous salicylic acid in iron-deficiency responses in Arabidopsis.
    J. Exp. Bot., 2016. 67(14): p. 4179-93
    [PMID:27208542]
  5. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]
  6. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  7. Kailasam S,Wang Y,Lo JC,Chang HF,Yeh KC
    S-Nitrosoglutathione works downstream of nitric oxide to mediate iron-deficiency signaling in Arabidopsis.
    Plant J., 2018. 94(1): p. 157-168
    [PMID:29396986]
  8. Kurt F,Filiz E
    Genome-wide and comparative analysis of bHLH38, bHLH39, bHLH100 and bHLH101 genes in Arabidopsis, tomato, rice, soybean and maize: insights into iron (Fe) homeostasis.
    Biometals, 2018. 31(4): p. 489-504
    [PMID:29546482]