PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g028820.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 296aa    MW: 34997.2 Da    PI: 9.9363
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g028820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.68.8e-3072122151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                     krien++nrqvt+skRrng++KKA+EL vLCda+v++i+fss++kl+ey+s
  Csa06g028820.1  72 KRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYIS 122
                     79***********************************************86 PP
2K-box77.63.2e-26134232199
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yq+ s+++++++++e++q+  +kL + ++nL+++++++lGe+Le+L++ eL++Le+++e+  k +R++K + l +qie+++kk+k++q+++k+L 
  Csa06g028820.1 134 YQSISDVDVWSTQYERMQETKRKLLETNRNLRTQIKQRLGECLEELDYHELRRLEDEMENTFKLVRERKIKSLGNQIETTKKKNKSQQDIQKNLI 228
                     78899999**************************************************************************************9 PP

           K-box  96 kkle 99 
                     ++le
  Csa06g028820.1 229 HELE 232
                     9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.14264124IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-4064123IPR002100Transcription factor, MADS-box
CDDcd002651.02E-3965143No hitNo description
SuperFamilySSF554556.93E-3666157IPR002100Transcription factor, MADS-box
PROSITE patternPS00350066120IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-286686IPR002100Transcription factor, MADS-box
PfamPF003193.5E-2573120IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-2886101IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-28101122IPR002100Transcription factor, MADS-box
PfamPF014864.1E-14145231IPR002487Transcription factor, K-box
PROSITE profilePS5129713.607147237IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
LFIVTQVDPL LLQLYLSLSI SFLFFLKKFY FISFFLLYLF VLSPPNLFSK RFKTKVEKKK  60
KKNMARGKIQ IKRIENQTNR QVTYSKRRNG LFKKAHELTV LCDARVSIIM FSSSNKLHEY  120
ISPNTTTKEI VDLYQSISDV DVWSTQYERM QETKRKLLET NRNLRTQIKQ RLGECLEELD  180
YHELRRLEDE MENTFKLVRE RKIKSLGNQI ETTKKKNKSQ QDIQKNLIHE LELRAEDPHY  240
GLVDNGGDYD SVLGYQIEGS RAYALRYHQN HHHHYPNHAL HAPSASDIIT FHLLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-1764124161MEF2 CHIMERA
6byy_B3e-1764124161MEF2 CHIMERA
6byy_C3e-1764124161MEF2 CHIMERA
6byy_D3e-1764124161MEF2 CHIMERA
6bz1_A3e-1764124161MEF2 CHIMERA
6bz1_B3e-1764124161MEF2 CHIMERA
6bz1_C3e-1764124161MEF2 CHIMERA
6bz1_D3e-1764124161MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the genetic control of flower development. Is required for normal development of petals and stamens in the wild-type flower. Forms a heterodimer with PISTILLATA that is required for autoregulation of both AP3 and PI genes. AP3/PI heterodimer interacts with APETALA1 or SEPALLATA3 to form a ternary complex that could be responsible for the regulation of the genes involved in the flower development. AP3/PI heterodimer activates the expression of NAP. AP3/PI prevents GATA22/GNL and GATA21/GNC expression (PubMed:18417639). {ECO:0000269|PubMed:18417639, ECO:0000269|PubMed:8565821, ECO:0000269|PubMed:9489703}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g028820.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated by the meristem identity proteins APETALA1 and LEAFY with the cooperation of UFO. Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. {ECO:0000269|PubMed:11283333, ECO:0000269|PubMed:19783648}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5517640.0EU551764.1 Capsella bursa-pastoris APETALA3-like protein (AP3a) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010515958.11e-173PREDICTED: floral homeotic protein APETALA 3
SwissprotP356321e-167AP3_ARATH; Floral homeotic protein APETALA 3
TrEMBLA0A1J3IMM11e-171A0A1J3IMM1_NOCCA; Floral homeotic protein APETALA 3 (Fragment)
STRINGXP_010515958.11e-172(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52612750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-151MIKC_MADS family protein
Publications ? help Back to Top
  1. Furner I,Ellis L,Bakht S,Mirza B,Sheikh M
    CAUT lines: a novel resource for studies of cell autonomy in Arabidopsis.
    Plant J., 2008. 53(4): p. 645-60
    [PMID:18269574]
  2. Jing D, et al.
    Two ancestral APETALA3 homologs from the basal angiosperm Magnolia wufengensis (Magnoliaceae) can affect flower development of Arabidopsis.
    Gene, 2014. 537(1): p. 100-7
    [PMID:24334124]
  3. Zhang Y, et al.
    A cucumber DELLA homolog CsGAIP may inhibit staminate development through transcriptional repression of B class floral homeotic genes.
    PLoS ONE, 2014. 9(3): p. e91804
    [PMID:24632777]
  4. Nakamura Y,Liu YC,Lin YC
    Floral glycerolipid profiles in homeotic mutants of Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2014. 450(4): p. 1272-5
    [PMID:24984150]
  5. Behrend A,Borchert T,Hohe A
    "The usual suspects"- analysis of transcriptome sequences reveals deviating B gene activity in C. vulgaris bud bloomers.
    BMC Plant Biol., 2015. 15: p. 8
    [PMID:25604890]
  6. Chen Z, et al.
    Overexpression of AtAP1M3 regulates flowering time and floral development in Arabidopsis and effects key flowering-related genes in poplar.
    Transgenic Res., 2015. 24(4): p. 705-15
    [PMID:25820621]
  7. Yunus IS, et al.
    Phosphatidic acid is a major phospholipid class in reproductive organs of Arabidopsis thaliana.
    Plant Signal Behav, 2015. 10(8): p. e1049790
    [PMID:26179579]
  8. Sun JJ, et al.
    CsAP3: A Cucumber Homolog to Arabidopsis APETALA3 with Novel Characteristics.
    Front Plant Sci, 2016. 7: p. 1181
    [PMID:27540391]