PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g027310.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRF

Protein Properties

Length: 395aa MW: 44001.1 Da PI: 7.4279

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g027310.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	80	2.2e-25	150	194	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrC+RtDGKkWRCsr+v++g+k+C+rH+hrgr+rsrk++e+ Csa06g027310.1 150 DPEPGRCKRTDGKKWRCSRDVVAGHKYCDRHIHRGRNRSRKPVET 194 79****************************************996 PP
2	QLQ	53	1e-18	81	116	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 F+++Q+q+L+ Q+l+y+y++a++ vP+eLl++i+k Csa06g027310.1 81 LFSWTQWQELELQALIYRYMLAGASVPQELLLPIKK 116 5*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.8E-11	80	116	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.299	81	116	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	4.9E-13	82	114	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.479	150	194	IPR014977	WRC domain
Pfam	PF08879	1.8E-21	151	193	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MDLQLKQWRS QQQNESEEQG SATKISNFFF DQIQSQTATS AAAAAPLPLF VPEPTSSSSF 60 SCFSPDSSSS SSSKFLKVGN LFSWTQWQEL ELQALIYRYM LAGASVPQEL LLPIKKSLIH 120 QSPMHFLHHP LQHSFPHQQP SWYWGRGAMD PEPGRCKRTD GKKWRCSRDV VAGHKYCDRH 180 IHRGRNRSRK PVETTTTTTT TTTTATTAAP SFVLGEELGH AHGHGPNNNH FFSSGSSQHL 240 QLNHQQSCSS EMKQESNNNS NNHKRPYEAH NGFSNGRSDD GHILRHFFDD WPRSSDSTSS 300 PMSSSNCHLS ISMPGNGNTS SDVSLKLSTG NEEEEENMRN NNNNNNSERE QLNWWSNGGN 360 HHNNMGGPLA EALRSASSTP SVLHQMGIST QVFH*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MDLQLKQWRS QQQNESEEQG SATKISNFFF DQIQSQTATS AAAAAPLPLF VPEPTSSSSF  60
SCFSPDSSSS SSSKFLKVGN LFSWTQWQEL ELQALIYRYM LAGASVPQEL LLPIKKSLIH  120
QSPMHFLHHP LQHSFPHQQP SWYWGRGAMD PEPGRCKRTD GKKWRCSRDV VAGHKYCDRH  180
IHRGRNRSRK PVETTTTTTT TTTTATTAAP SFVLGEELGH AHGHGPNNNH FFSSGSSQHL  240
QLNHQQSCSS EMKQESNNNS NNHKRPYEAH NGFSNGRSDD GHILRHFFDD WPRSSDSTSS  300
PMSSSNCHLS ISMPGNGNTS SDVSLKLSTG NEEEEENMRN NNNNNNSERE QLNWWSNGGN  360
HHNNMGGPLA EALRSASSTP SVLHQMGIST QVFH*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g027310.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY102637	0.0	AY102637.1 Arabidopsis thaliana transcription activator (GRF4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010515769.1	0.0	PREDICTED: growth-regulating factor 4
Swissprot	Q8L8A7	0.0	GRF4_ARATH; Growth-regulating factor 4
TrEMBL	R0HJT5	0.0	R0HJT5_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010515769.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1926	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	1e-145	growth-regulating factor 4

Publications ? help Back to Top
Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]