PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g024020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 867aa    MW: 97057.3 Da    PI: 7.096
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g024020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS147.11.7e-45271962167
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lLl+cA+a++s+d++la+++L+ l+++a pdgd++qRl++ f++AL +r ++++++l+++++  + +++ +  ++  l +f++++P+++f+++
  Csa06g024020.1  27 EQLLLHCATAIDSNDAALAHQILWVLNNTAPPDGDSTQRLTSAFLRALLSRAVSKTPTLSSTISFLPPADELHRFSVVELAAFVDLTPWHRFGFI 121
                     79*****************************************************************997666666666677************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleetgerLak 167
                     +aN+aIl aveg ++vHi+D+++++++Q p+L++a+asR  ++pp l++T+v+s++++    + ++ee+g++L k
  Csa06g024020.1 122 AANSAILTAVEGYSTVHIVDLSLTHCMQIPTLIDAMASRFnKPPPLLKLTVVSSSDNFppfINISYEELGSKLIK 196
                     ***************************************957778*********998899999999999999976 PP
2GRAS246.21.3e-752335212279
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lLl+cA+a++s+d++la+++L+ l+++a pdgd++qRl++ f++AL +r ++++++l+++++  + +++ +  ++  l +f++++P+++f+++
  Csa06g024020.1 233 EQLLLHCATAIDSNDAALAHQILWVLNNTAPPDGDSTQRLTTAFLRALLSRAVSKTPTLSSTISFLPPADELHRFSVVELAAFVDLTPWHRFGFI 327
                     79*****************************************************************997666666666677************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl...vak 184
                     +aN aIl aveg ++vHi+D+++++++Q p+L++a+asR  ++pp l++T+v+s++++    + ++ee+g++L +fA++ ++++ef+++   +++
  Csa06g024020.1 328 AANAAILTAVEGYSTVHIVDLSLTHCMQIPTLIDAMASRLnKPPPLLKLTVVSSSDNFppfINISYEELGSKLVNFATTRNITMEFTIIpstYSD 422
                     ***************************************966777*********99999999**************************9886677 PP

            GRAS 185 rledleleeLrvkp...gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                      +++l l++Lrv p   +Eal+Vn++++l ++++e+++++s   r+ +Lk ++sl+P++v+++e+++d++s+++++r+ +a++y++  fd++++ 
  Csa06g024020.1 423 GFSSL-LQQLRVYPssfNEALVVNCHMMLRYIPEETLTSSSssLRTVFLKHLRSLNPRIVTLIEEDVDLTSGNLVNRLRSAFNYFWIPFDTTDTF 516
                     78888.*****************************9998887799*************************************************9 PP

            GRAS 275 lpres 279
                     ++++ 
  Csa06g024020.1 517 MSEQR 521
                     86654 PP
3GRAS288.91.4e-8852186339373
            GRAS  39 qRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa 133
                     +R  + f++AL +r ++++++l+++++  + +++ +  ++  l +f++++P+++f++++aN aIl aveg ++vHi+D+++++++Q p+L++a+a
  Csa06g024020.1 521 RRRXTAFLRALLSRAVSKTPTLSSTISFLPPADELHRFSVVELAAFVDLTPWHRFGFIAANAAILTAVEGYSTVHIVDLSLTHCMQIPTLIDAMA 615
                     577889************************997666666666677************************************************** PP

            GRAS 134 sRp.egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl...vakrledleleeLrvkp...gEalaVnlvlqlhrlldesv 218
                     sR  ++pp l++T+v+s++++    + ++ee+g++L +fA++ ++++ef+++   +++ +++l l++Lrv p   +Eal+Vn++++l +++de++
  Csa06g024020.1 616 SRLnKPPPLLKLTVVSSSDNFppfINISYEELGSKLVNFATTRNITMEFTIIpstYSDGFSSL-LQQLRVYPssfNEALVVNCHMMLRYIPDETL 709
                     **966777*********99999999**************************988667778888.******************************9 PP

            GRAS 219 sles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311
                     +++s   r+ +Lk+++sl+P++v+++e+++d++s+++++r+ +a++y++  fd++++ +   se+r+++E+e ++++i++vva+egaer+er et
  Csa06g024020.1 710 TSSSssLRTVFLKQLRSLNPRIVTLIEEDVDLTSGNLVNRLRSAFNYFWIPFDTTDTFM---SEQRRWYEAE-ISWKIESVVAKEGAERVERSET 800
                     98887799**************************************************7...9*********.********************** PP

            GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +++W er++ea F+ v+++e+a++++k++l++++ ++g++ e++++slvl+Wk++++v++++W
  Csa06g024020.1 801 KRRWFERMREAEFGGVRVKEEAVADVKAMLEEHAvGWGMKKEDDDNSLVLTWKGHSVVFATVW 863
                     *************************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.291194IPR005202Transcription factor GRAS
PfamPF035145.8E-4327196IPR005202Transcription factor GRAS
PROSITE profilePS5098539.865206843IPR005202Transcription factor GRAS
PfamPF035144.9E-86521863IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 867 aa     Download sequence    Send to blast
MTKTRIRNLT RLPSPKPLRG GDANFMEQLL LHCATAIDSN DAALAHQILW VLNNTAPPDG  60
DSTQRLTSAF LRALLSRAVS KTPTLSSTIS FLPPADELHR FSVVELAAFV DLTPWHRFGF  120
IAANSAILTA VEGYSTVHIV DLSLTHCMQI PTLIDAMASR FNKPPPLLKL TVVSSSDNFP  180
PFINISYEEL GSKLIKRYIS LQNSTQMTKT RIRNLTRLPS PKPLRGGDAN FMEQLLLHCA  240
TAIDSNDAAL AHQILWVLNN TAPPDGDSTQ RLTTAFLRAL LSRAVSKTPT LSSTISFLPP  300
ADELHRFSVV ELAAFVDLTP WHRFGFIAAN AAILTAVEGY STVHIVDLSL THCMQIPTLI  360
DAMASRLNKP PPLLKLTVVS SSDNFPPFIN ISYEELGSKL VNFATTRNIT MEFTIIPSTY  420
SDGFSSLLQQ LRVYPSSFNE ALVVNCHMML RYIPEETLTS SSSSLRTVFL KHLRSLNPRI  480
VTLIEEDVDL TSGNLVNRLR SAFNYFWIPF DTTDTFMSEQ RRRXTAFLRA LLSRAVSKTP  540
TLSSTISFLP PADELHRFSV VELAAFVDLT PWHRFGFIAA NAAILTAVEG YSTVHIVDLS  600
LTHCMQIPTL IDAMASRLNK PPPLLKLTVV SSSDNFPPFI NISYEELGSK LVNFATTRNI  660
TMEFTIIPST YSDGFSSLLQ QLRVYPSSFN EALVVNCHMM LRYIPDETLT SSSSSLRTVF  720
LKQLRSLNPR IVTLIEEDVD LTSGNLVNRL RSAFNYFWIP FDTTDTFMSE QRRWYEAEIS  780
WKIESVVAKE GAERVERSET KRRWFERMRE AEFGGVRVKE EAVADVKAML EEHAVGWGMK  840
KEDDDNSLVL TWKGHSVVFA TVWIPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B2e-392286529420Protein SHORT-ROOT
5b3h_E2e-392286529420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g024020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2266230.0AK226623.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-29-K13.
GenBankAL1329780.0AL132978.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4.
GenBankBT0125530.0BT012553.1 Arabidopsis thaliana At3g49950 gene, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010515361.20.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A178V9610.0A0A178V961_ARATH; Uncharacterized protein
STRINGXP_010426526.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein