PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g022230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 450aa    MW: 50063 Da    PI: 4.8611
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g022230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.81.7e-13112134426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     e C+f++rtG Ck+G++CkF+H+
  Csa06g022230.1 112 EDCSFYMRTGSCKFGSTCKFNHP 134
                     89********************9 PP
2zf-CCCH34.14.6e-11165187527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C++++rtG CkyG++C+F+H++
  Csa06g022230.1 165 DCKYYFRTGGCKYGETCRFNHSK 187
                     6********************95 PP
3zf-CCCH41.52.2e-13207232126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C++++r+G CkyG+ CkF+H+
  Csa06g022230.1 207 PGEVECPYYMRNGSCKYGAECKFNHP 232
                     5789*********************9 PP
4zf-CCCH215.7e-07349374227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG Ck+  +C+++H++
  Csa06g022230.1 349 DQPECSYYMKTGDCKFKFNCRYHHPK 374
                     689*********************96 PP
5zf-CCCH34.92.7e-11395419226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C +++r+G+Ck+G+ C+F H+
  Csa06g022230.1 395 DQSICTHYSRYGICKFGPACRFDHS 419
                     6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.83E-6106136IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6108135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859108136IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-11112134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5114133IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-5160187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.882160188IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5163187IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8165187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5166187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.516206234IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-7206233IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-11208232IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-6210233IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-5212231IPR000571Zinc finger, CCCH-type
SMARTSM003560.2347374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.15347375IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4349374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5351377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6392419IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-4393420IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.436393421IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8395419IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4397420IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MANSEKIADG FEAKPVSGSY SGDLSADRSL SDAINHEAEE DLTDQFKNVG LDEVTKEQSE  60
TTMRVCEGSG GLDSNAVDIT QEEDEEEENG YGWSENESEE SEAVYPVRPE AEDCSFYMRT  120
GSCKFGSTCK FNHPLSTKTK IVSKIARDNK VREKEEDGDN LRQIDCKYYF RTGGCKYGET  180
CRFNHSKTNS CLASAPELNF LGLPIRPGEV ECPYYMRNGS CKYGAECKFN HPDPTTIGGT  240
DSPSFRGNNN VSIGSFSPKS TFQASSTSWS SPRHPNGSTP FIPVMLSQTH GVPSQTPEWN  300
GYQASVYSSE RGVFTPSTTY LMNNTSAETS MLSQYRYQMP PEEFPERPDQ PECSYYMKTG  360
DCKFKFNCRY HHPKNRLPKL PPYALNDKGL PLRPDQSICT HYSRYGICKF GPACRFDHSV  420
QPPYSTESSQ AIVEPPQVGA NGNESDGWN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g022230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0331390.0BT033139.1 Arabidopsis thaliana unknown protein (At3g48440) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010515161.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1
SwissprotQ9STM40.0C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLD7LRW70.0D7LRW7_ARALL; Zinc finger (CCCH-type) family protein
STRINGXP_010515161.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]