PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g021240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 133aa MW: 15272.7 Da PI: 9.2875 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.9 | 2.6e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ + g++R+ k+c++rw +yl Csa06g021240.1 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTHTGLRRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 29.1 | 2.4e-09 | 67 | 100 | 1 | 36 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 rg++T+ E++ ++++ ++lG++ W++Ia++++ g++ Csa06g021240.1 67 RGNFTQHEEKMILHLQALLGNR-WAAIASYLP-GLS 100 89********************.*********.886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.71 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.64E-26 | 11 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-18 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.40E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS50090 | 6.237 | 62 | 98 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-13 | 65 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0052 | 66 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-7 | 67 | 100 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.49E-4 | 69 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLRRCS KSCRLRWTNY 60 LRPGIKRGNF TQHEEKMILH LQALLGNRWA AIASYLPGLS HIADFNVTLS HTQLVDFFFF 120 CFFFLVYKYV EG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-21 | 12 | 106 | 25 | 118 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269|PubMed:25305760, ECO:0000269|PubMed:27577115}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g021240.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269|PubMed:25305760}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519595 | 1e-138 | AY519595.1 Arabidopsis thaliana MYB transcription factor (At3g47600) mRNA, complete cds. | |||
GenBank | BT002802 | 1e-138 | BT002802.1 Arabidopsis thaliana clone RAFL15-01-L01 (R20190) putative transcription factor MYB94 (At3g47600) mRNA, complete cds. | |||
GenBank | BT004361 | 1e-138 | BT004361.1 Arabidopsis thaliana clone U20190 putative transcription factor MYB94 (At3g47600) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010515062.1 | 9e-97 | PREDICTED: myb-related protein 306 isoform X1 | ||||
Swissprot | Q9SN78 | 9e-70 | MYB94_ARATH; Transcription factor MYB94 | ||||
TrEMBL | A0A1J3I880 | 4e-68 | A0A1J3I880_NOCCA; Uncharacterized protein | ||||
TrEMBL | R0HGR9 | 3e-68 | R0HGR9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010515062.1 | 4e-96 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 5e-72 | myb domain protein 94 |
Publications ? help Back to Top | |||
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