PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g019850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 292aa MW: 33641.8 Da PI: 10.4062 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.8e-17 | 96 | 141 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l ++ ++++G++ W++Iar+++ gRt++++k++w++++ Csa06g019850.1 96 RGKMTPQEERLVLEFHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 141 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.169 | 12 | 90 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 7.1E-22 | 76 | 145 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.3E-10 | 76 | 102 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.1 | 91 | 145 | IPR017930 | Myb domain |
SMART | SM00717 | 7.2E-17 | 95 | 143 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 96 | 140 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.18E-11 | 98 | 141 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-20 | 103 | 142 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MVNQAEKELF TNKRTIKKEW ERDENDARGK PKRFMDRTGG HTSGKFRSLI WRPTMGFYSK 60 SIRFEGGGRK IRIGLNRTGK SCRLRWVNYL HPGLKRGKMT PQEERLVLEF HAKWGNRWSK 120 IARKLPGRTD NEIKNYWRTH MRKKAQEKKR PASPTSSFSN CSSSSMTTTT TNTQETSCHS 180 RKSSGKVSFY DTGGSRSTGD MMNQETEDVY SMDDIWREID HSAVNIIKPV KDIYSEQSHC 240 LSYPTLASPT WESSLDSIWN MDADQSKMSS SFANDQFPFC FQHSRSPWSS G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-18 | 77 | 145 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 34 | ARGKPKRFM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g019850.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK176475 | 0.0 | AK176475.1 Arabidopsis thaliana mRNA for Myb DNA binding protein -like, complete cds, clone: RAFL24-27-H12. | |||
GenBank | DQ075255 | 0.0 | DQ075255.1 Arabidopsis thaliana MYB transcription factor MYB48-1 (At3g46130) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010426042.1 | 0.0 | PREDICTED: transcription factor MYB48 isoform X3 | ||||
Swissprot | Q9LX82 | 1e-134 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | F4J7Y0 | 1e-147 | F4J7Y0_ARATH; Myb domain protein 48 | ||||
STRING | XP_010426042.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2502 | 27 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.4 | 1e-143 | myb domain protein 48 |
Publications ? help Back to Top | |||
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