PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g018920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 205aa    MW: 23302.2 Da    PI: 9.2329
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g018920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.4e-19133166134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cgt +Tp+WR+gp+g++tLCnaCG++yr  +
  Csa06g018920.1 133 CTHCGTRNTPMWREGPRGPRTLCNACGVRYRTGR 166
                     *******************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-15127177IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.598127163IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.8E-15130189No hitNo description
Gene3DG3DSA:3.30.50.102.8E-15131165IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.98E-17132181No hitNo description
PfamPF003207.3E-17133166IPR000679Zinc finger, GATA-type
PROSITE patternPS003440133158IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSRKDVVVHE EEEEDLGTAM QKMTIPLAEL NQLPNDSVYN LVDGVRKIIE DPNLLFEDSR  60
EFGNLHQDDK SVEDSKDSKQ LENSTKPPTA SRGRFSVPPK RSRNKRGRPK GQCLKSSATV  120
VDSNFVNITD KSCTHCGTRN TPMWREGPRG PRTLCNACGV RYRTGRLYPE YRPASSPEFK  180
PNVYSNFHRK VMEIRRERHS PPAE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100105RSRNKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g018920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514859.11e-152PREDICTED: GATA transcription factor 14-like
SwissprotQ9M1U22e-77GAT14_ARATH; GATA transcription factor 14
TrEMBLR0HP941e-86R0HP94_9BRAS; Uncharacterized protein
STRINGXP_010514859.11e-151(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM163681113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45170.19e-73GATA transcription factor 14