PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g015610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 151aa MW: 17016.2 Da PI: 5.0087 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 28.7 | 1.7e-09 | 20 | 70 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T...TSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss...tgklyeys 50 + k +r+v skRr++++ K + L +a++av + s+ ++ +y++s Csa06g015610.1 20 CDTKQQRSVACSKRRQTLFSKVADFCLLSGANIAVFVTSPaenSDAVYTFS 70 577999*********************************822235677776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.2E-14 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.563 | 10 | 58 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.71E-21 | 11 | 94 | No hit | No description |
SuperFamily | SSF55455 | 7.33E-16 | 12 | 103 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-9 | 23 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MPAMTMKRGG TKRKIEIKKC DTKQQRSVAC SKRRQTLFSK VADFCLLSGA NIAVFVTSPA 60 ENSDAVYTFS GYSPASEIAD CYLNGKSPPK ITNPQTKLGF WWEDPDLYRY CDDLCELKMI 120 EDRYLVNQNE DNVGFVDSLW ETEKDNNGSE * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g015610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010412491.1 | 1e-76 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
TrEMBL | R0H9P9 | 1e-65 | R0H9P9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010507155.1 | 5e-78 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6395 | 14 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27130.1 | 1e-62 | AGAMOUS-like 39 |