PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g015450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 419aa    MW: 47318.9 Da    PI: 6.3004
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g015450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.12.5e-091958443
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    + k +r+v  skR ++++ KA  L+ L +a++ v + s+ 
  Csa06g015450.1 19 DTKQQRSVACSKRHQTLFSKAADLCLLSGANIVVFVTSPA 58
                    56889*******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.0E-15867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.605856IPR002100Transcription factor, MADS-box
CDDcd002663.50E-20992No hitNo description
SuperFamilySSF554554.71E-1510101IPR002100Transcription factor, MADS-box
PfamPF003191.9E-82161IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MTMKRRGGTK RKIEIKKRDT KQQRSVACSK RHQTLFSKAA DLCLLSGANI VVFVTSPAEN  60
SDVVYSFSGY SPASEIADRY LNGKSPPKIT NPQTKLGFWW EDPDLYRNCD DLCELKMIED  120
RMLRTKKHMM DCLEKKEKSQ FVCDQNPSSS ASLDHRSDEY QSVELDDEEV GLAAGPQLRR  180
KSTRAHTHGN KKKGVVACPQ EEPMAATKER LEDVEVNLGT MQDKIQKLTT DVANKFHNME  240
VLLHRIVEDN RRVAEENREA INRLVASRSS GGSVSYLGRF GTAASETWDW DWHCGDPVRC  300
QTCHLSRETE VQRREEAGVV SSDVGPLGAV LRSQERDSPQ EDEVTGAESQ SSLSTNNELF  360
RTNLMNLQRG EILNHPSELL SNWFSIDLDE ESWQSIYQNM NHQLRACNWS GSLTTIAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g015450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010412485.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27130.11e-74AGAMOUS-like 39