PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g012860.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 287aa    MW: 32844.4 Da    PI: 6.9521
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g012860.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.8e-182987148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...........TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...........kgRtlkqcksrwqkyl 48
                     +g+WT eEd+ll+++v+ +G g+W+t+a++ g           ++R++k+c++rw +yl
   Csa06g012860.1 29 KGPWTLEEDKLLAEYVTTHGEGRWSTVAKCAGnyfdsiiafiwLNRSGKSCRLRWVNYL 87
                     79*******************************************************97 PP
2Myb_DNA-binding49.97.5e-1693137147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+++
   Csa06g012860.1  93 RGQITPQEEGIILELHSLWGNK-WSTIARYLP-GRTDNEIKNYWRTH 137
                      7888******************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.0882487IPR017930Myb domain
SuperFamilySSF466899.36E-3026134IPR009057Homeodomain-like
SMARTSM007173.7E-142889IPR001005SANT/Myb domain
PfamPF002491.2E-162987IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-223094IPR009057Homeodomain-like
CDDcd001671.05E-103187No hitNo description
PROSITE profilePS5129424.15988142IPR017930Myb domain
SMARTSM007171.8E-1392140IPR001005SANT/Myb domain
PfamPF002491.1E-1393137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2395141IPR009057Homeodomain-like
CDDcd001678.46E-1097137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MLDWGVQGHH QKHDHDPYQQ QQQQQGCRKG PWTLEEDKLL AEYVTTHGEG RWSTVAKCAG  60
NYFDSIIAFI WLNRSGKSCR LRWVNYLRPG LKRGQITPQE EGIILELHSL WGNKWSTIAR  120
YLPGRTDNEI KNYWRTHYKK KETSSSKQEK VKRSQSRKQE VELKPQPQAQ PQSHPFQLVS  180
RDHMNLENEQ NVASSLYYPT SVFNDQFSMP QSVATTSSDH SMIDESHLWG NLWNLNDDDL  240
HGFGDGSGQR IPADLSEKFP DGGIEALSCG SGDCSYNGFY MGGYIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23291417107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g012860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3719800.0AF371980.2 Arabidopsis thaliana putative transcription factor MYB121 (MYB121) mRNA, complete cds.
GenBankAY5195930.0AY519593.1 Arabidopsis thaliana MYB transcription factor (At3g30210) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514673.10.0PREDICTED: transcription factor MYB24-like
TrEMBLA0A178VB631e-164A0A178VB63_ARATH; MYB121
STRINGXP_010514673.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.11e-159myb domain protein 121