PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g011390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 334aa    MW: 37642.6 Da    PI: 6.6085
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g011390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.63.4e-55251511129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL++kv ++ +++  +i evd++kvePwdLp k+k +ekewyfF+ +d+ky+tg r+nratk+gyWkatgkdke+++ 
  Csa06g011390.1  25 LPPGFRFHPTDEELITHYLRPKVLDTFFSA-LAIGEVDLNKVEPWDLPWKAKIGEKEWYFFCVNDRKYPTGLRTNRATKAGYWKATGKDKEIFK- 117
                     79*************************999.67***************98999*****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +++lvg+kktLvfyk+rapkg+kt+Wvmheyrle
  Csa06g011390.1 118 GKSLVGMKKTLVFYKERAPKGVKTNWVMHEYRLE 151
                     999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-6122175IPR003441NAC domain
PROSITE profilePS5100556.7425175IPR003441NAC domain
PfamPF023657.2E-3026150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDYKVSRIGE IVKGEEVEDS EKIDLPPGFR FHPTDEELIT HYLRPKVLDT FFSALAIGEV  60
DLNKVEPWDL PWKAKIGEKE WYFFCVNDRK YPTGLRTNRA TKAGYWKATG KDKEIFKGKS  120
LVGMKKTLVF YKERAPKGVK TNWVMHEYRL EGEHAIDNLP KTAKNEFVIS RVFQKRADGT  180
KVHISGLRMF GSGVNKFEPG GLPQLMDSSP YLKSRGRDSL AGTAVGCLFS HVTCFSDDDK  240
SLVDELKDNS KATRFGSSST NLMPNIVSTL DYDHLSLQDD SSMLKMLLDS EETQFEKNLE  300
NSGSLESELT ASSWHGHSPC STGPVNFDNV WNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-49151817171NO APICAL MERISTEM PROTEIN
1ut4_B1e-49151817171NO APICAL MERISTEM PROTEIN
1ut7_A1e-49151817171NO APICAL MERISTEM PROTEIN
1ut7_B1e-49151817171NO APICAL MERISTEM PROTEIN
3swm_A1e-491518110174NAC domain-containing protein 19
3swm_B1e-491518110174NAC domain-containing protein 19
3swm_C1e-491518110174NAC domain-containing protein 19
3swm_D1e-491518110174NAC domain-containing protein 19
3swp_A1e-491518110174NAC domain-containing protein 19
3swp_B1e-491518110174NAC domain-containing protein 19
3swp_C1e-491518110174NAC domain-containing protein 19
3swp_D1e-491518110174NAC domain-containing protein 19
4dul_A1e-49151817171NAC domain-containing protein 19
4dul_B1e-49151817171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g011390.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0626380.0AY062638.1 Arabidopsis thaliana Unknown protein (MRI12.1) mRNA, complete cds.
GenBankBT0087160.0BT008716.1 Arabidopsis thaliana At3g29035 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514621.10.0PREDICTED: NAC domain-containing protein 59-like
SwissprotQ9LJW31e-180NAC59_ARATH; NAC domain-containing protein 59
TrEMBLD7LM770.0D7LM77_ARALL; ANAC059/ATNAC3
STRINGXP_010514621.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29035.10.0NAC domain containing protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Manacorda CA, et al.
    Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes.
    Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98
    [PMID:23945002]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]