PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g011390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 334aa MW: 37642.6 Da PI: 6.6085 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.6 | 3.4e-55 | 25 | 151 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++kv ++ +++ +i evd++kvePwdLp k+k +ekewyfF+ +d+ky+tg r+nratk+gyWkatgkdke+++ Csa06g011390.1 25 LPPGFRFHPTDEELITHYLRPKVLDTFFSA-LAIGEVDLNKVEPWDLPWKAKIGEKEWYFFCVNDRKYPTGLRTNRATKAGYWKATGKDKEIFK- 117 79*************************999.67***************98999*****************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfyk+rapkg+kt+Wvmheyrle Csa06g011390.1 118 GKSLVGMKKTLVFYKERAPKGVKTNWVMHEYRLE 151 999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.19E-61 | 22 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.74 | 25 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.2E-30 | 26 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MDYKVSRIGE IVKGEEVEDS EKIDLPPGFR FHPTDEELIT HYLRPKVLDT FFSALAIGEV 60 DLNKVEPWDL PWKAKIGEKE WYFFCVNDRK YPTGLRTNRA TKAGYWKATG KDKEIFKGKS 120 LVGMKKTLVF YKERAPKGVK TNWVMHEYRL EGEHAIDNLP KTAKNEFVIS RVFQKRADGT 180 KVHISGLRMF GSGVNKFEPG GLPQLMDSSP YLKSRGRDSL AGTAVGCLFS HVTCFSDDDK 240 SLVDELKDNS KATRFGSSST NLMPNIVSTL DYDHLSLQDD SSMLKMLLDS EETQFEKNLE 300 NSGSLESELT ASSWHGHSPC STGPVNFDNV WNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-49 | 15 | 181 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-49 | 15 | 181 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-49 | 15 | 181 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-49 | 15 | 181 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-49 | 15 | 181 | 10 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-49 | 15 | 181 | 10 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-49 | 15 | 181 | 10 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-49 | 15 | 181 | 10 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-49 | 15 | 181 | 10 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-49 | 15 | 181 | 10 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-49 | 15 | 181 | 10 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-49 | 15 | 181 | 10 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-49 | 15 | 181 | 7 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-49 | 15 | 181 | 7 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g011390.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY062638 | 0.0 | AY062638.1 Arabidopsis thaliana Unknown protein (MRI12.1) mRNA, complete cds. | |||
GenBank | BT008716 | 0.0 | BT008716.1 Arabidopsis thaliana At3g29035 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010514621.1 | 0.0 | PREDICTED: NAC domain-containing protein 59-like | ||||
Swissprot | Q9LJW3 | 1e-180 | NAC59_ARATH; NAC domain-containing protein 59 | ||||
TrEMBL | D7LM77 | 0.0 | D7LM77_ARALL; ANAC059/ATNAC3 | ||||
STRING | XP_010514621.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29035.1 | 0.0 | NAC domain containing protein 3 |
Publications ? help Back to Top | |||
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