PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g011260.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ZF-HD

Protein Properties

Length: 324aa MW: 34419.1 Da PI: 7.975

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g011260.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	110.9	6.6e-35	51	108	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 +v+YkeClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++e+ Csa06g011260.1 51 TVTYKECLKNHAAAIGGHALDGCGEFMPSPSSTpSDPTSLKCAACGCHRNFHRRDPED 108 799***************************99******************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	7.0E-18	52	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	5.4E-29	52	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.0E-31	53	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.717	54	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	2.4E-29	190	259	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.11E-18	192	259	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.1E-26	199	256	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MLEVRAMDMM TPKSPEPESE TSTRIQPAKP ISFSNGIIKR HHHHHHHHNV TVTYKECLKN 60 HAAAIGGHAL DGCGEFMPSP SSTPSDPTSL KCAACGCHRN FHRRDPEDSS ALPPPSLPLS 120 STTTAAIEYQ PHHRHHPPPP LPPPLPRSPS SSSPPPISSS YMLLALSGNN KTVPFSDLNF 180 SAAAAAANNH ISTTTPGSRK RFRTKFSSSQ KEKMHEFADR IGWKIQKRDE DDVREFCREI 240 GVDKGVLKVW MHNNKNTFKF PGGGIATVQR DGNGVGGEDD GVRGGSGLGN DEDGGGGGGG 300 GRFESDSGGA DGGGNVNASS SST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-21	198	257	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g011260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117188	0.0	AK117188.1 Arabidopsis thaliana mRNA, clone: RAFL16-72-M15.
GenBank	AP002049	0.0	AP002049.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYI13.
GenBank	AY093171	0.0	AY093171.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds.
GenBank	AY128820	0.0	AY128820.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010514609.1	0.0	PREDICTED: zinc-finger homeodomain protein 9-like
Swissprot	Q9LHF0	1e-145	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A178V7P6	1e-142	A0A178V7P6_ARATH; ZHD9
STRING	XP_010514609.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2220	25	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	1e-105	homeobox protein 34

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]