PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g005580.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 449aa    MW: 51359.6 Da    PI: 5.9408
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g005580.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix895.3e-2860145286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                     W ++e+l Li +r em++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+n+ k++kk k+++ k  ts+ s ++ y++++e
  Csa06g005580.1  60 WVQDETLSLISLRGEMDNLFNTSKSNKHLWEQISSKMREQGFDRSPTMCTDKWRNILKEFKKAKHQDDKAtTSGGSAKMCYYKEIE 145
                     ********************************************************************9977999********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-451121IPR009057Homeodomain-like
PROSITE profilePS500908.22352116IPR017877Myb-like domain
SMARTSM007177.7E-456118IPR001005SANT/Myb domain
CDDcd122031.49E-2958123No hitNo description
PfamPF138375.5E-1959146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MFVSDNNPSR DINMMIDVTT SNGDLPTQQQ HNHHHQIILG DSSGGEDHEI KTPKKRAETW  60
VQDETLSLIS LRGEMDNLFN TSKSNKHLWE QISSKMREQG FDRSPTMCTD KWRNILKEFK  120
KAKHQDDKAT TSGGSAKMCY YKEIEDIFRE RNKKVALYKS PATPPPSSSA KVDSFMQFTD  180
KGFEDTGISF TSVEANGRPT LNLETQLDHD GLPLAIASAD PVTSNGVPPW NWRDASGNGG  240
DGHPFVGRII TVKFGEYTRR VGIDGTAEAI KEAIRSAFRL RTRRAFWLED EEQVVRSLDR  300
DMPLGNYTLH VDEAIKEAIR SAFRLRTRRA FWLEDEEQVV RSLDRDMPLG NYTLHVDEVV  360
SLVLEVFSIS KLKNSGIAVR VCHYDESDPL PVHQEEKIFY TEEDYRDFLA RRGWTCLREF  420
DAFRNIDMVR NIDNMDDLQP GVLYRGMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A3e-4254143186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g005580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0723700.0AB072370.1 Arabidopsis thaliana mRNA for transcription factor GT-4, complete cds.
GenBankBT0119510.0BT011951.1 Arabidopsis thaliana At3g25990 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514227.10.0PREDICTED: trihelix transcription factor GT-4-like isoform X1
RefseqXP_010514228.10.0PREDICTED: trihelix transcription factor GT-4-like isoform X2
SwissprotQ9LU920.0TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBLR0HJX10.0R0HJX1_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010514227.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.10.0Trihelix family protein