PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g005350.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 351aa MW: 39495.9 Da PI: 8.2258

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g005350.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.1e-32	192	247	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rF++a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Csa06g005350.1 192 KNRRCWSQELHRRFLNALKQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 247 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.527	189	249	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.6E-28	190	250	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.16E-18	190	250	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-27	192	247	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-7	194	245	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MTKNLSNMKN HNHKRERCSE YIEALEEERR KINVFQRELP LCLELVTQAI EAYKREISGT 60 TTENLYGQSE CSEQTTGECG RVLDLFIPIR HSSTSVEEVD DKDDDDEHES HETNIDFNDK 120 NMKSDWLKSV QLWNQSDAVV SNNRQDCLQN KPETLVKAVL KRNDGEEGKN NNIKLSVTSS 180 SGGGSDGRGQ RKNRRCWSQE LHRRFLNALK QLGGPHVATP KQIRELMKVD GLTNDEVKSH 240 LQKYRLHARR PSQTTPNNGN SQNQHFVVVG GIWVPQTNQS TANAVASVET TTGIYGPMVS 300 PLPSEWPSHS NFSSRISEER SRCSNKGILR CSSPAMSSST RTKTKDAKIS *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MTKNLSNMKN HNHKRERCSE YIEALEEERR KINVFQRELP LCLELVTQAI EAYKREISGT  60
TTENLYGQSE CSEQTTGECG RVLDLFIPIR HSSTSVEEVD DKDDDDEHES HETNIDFNDK  120
NMKSDWLKSV QLWNQSDAVV SNNRQDCLQN KPETLVKAVL KRNDGEEGKN NNIKLSVTSS  180
SGGGSDGRGQ RKNRRCWSQE LHRRFLNALK QLGGPHVATP KQIRELMKVD GLTNDEVKSH  240
LQKYRLHARR PSQTTPNNGN SQNQHFVVVG GIWVPQTNQS TANAVASVET TTGIYGPMVS  300
PLPSEWPSHS NFSSRISEER SRCSNKGILR CSSPAMSSST RTKTKDAKIS *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture, depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present. {ECO:0000269\|PubMed:25723764}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g005350.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269\|PubMed:25723764, ECO:0000269\|PubMed:27419465}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY085570	0.0	AY085570.1 Arabidopsis thaliana clone 157740 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010514200.1	0.0	PREDICTED: myb family transcription factor EFM-like
Swissprot	Q9LS00	0.0	HHO1_ARATH; Transcription factor HHO1
TrEMBL	A0A178V836	0.0	A0A178V836_ARATH; Uncharacterized protein
STRING	XP_010514200.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13600	18	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25790.1	1e-174	G2-like family protein

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]