PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g005270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 337aa MW: 38188.6 Da PI: 5.9876 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44 | 4.1e-14 | 134 | 180 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L ++++++k+L Csa06g005270.1 134 KSHSEAERRRRERINTHLAKLRSILPNT-----TKTDKASLLAEVIQHMKEL 180 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.85 | 131 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-11 | 134 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-14 | 135 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-14 | 135 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-13 | 137 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.49E-4 | 144 | 183 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 4.7E-4 | 218 | 269 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MYAMKEEDCL QTFHNLQDYQ DQFLLHHHPQ ILPWSSSSLP SFDPTHFPSN PTRYSDPVHC 60 FDRRASASSS SFNYNDSFVS PPPSMEHHQN HLRILSEALG PIMRRGSSFG FDGEIMGKLS 120 AQEVMDAKAL AASKSHSEAE RRRRERINTH LAKLRSILPN TTKTDKASLL AEVIQHMKEL 180 KRQTSLITDT CQVPTEPDDL TVDSAYNDEE GNLVIRASFC CQDRTDLMHD VINALKSLRL 240 RTLKAEIATV GGRVKNVLFL SREDDEEDHD GDDMEGYDAE RMMNDRVSSI EEALKAVIEK 300 CVHNNDESND NNNLEKSSSG SIKRQRTSKM VNRCYN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 144 | ERRRRE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for MONOPTEROS-dependent root initiation in embryo. Transcriptionally controlled by MONOPTEROS. {ECO:0000269|PubMed:20220754}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g005270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY058840 | 0.0 | AY058840.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds. | |||
GenBank | AY079033 | 0.0 | AY079033.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds. | |||
GenBank | AY086383 | 0.0 | AY086383.1 Arabidopsis thaliana clone 247881 mRNA, complete sequence. | |||
GenBank | DQ205679 | 0.0 | DQ205679.1 Arabidopsis thaliana ABA-regulated protein AIG1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010514188.1 | 0.0 | PREDICTED: transcription factor AIG1-like | ||||
Swissprot | Q9LS08 | 0.0 | BH032_ARATH; Transcription factor AIG1 | ||||
TrEMBL | A0A178VA88 | 0.0 | A0A178VA88_ARATH; TMO5 | ||||
STRING | XP_010514188.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13949 | 17 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25710.1 | 0.0 | basic helix-loop-helix 32 |