PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g005070.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 155aa    MW: 17103.5 Da    PI: 9.5238
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g005070.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.71.7e-092766443
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    e k +r v  skRr++++ KA  L+ L +a+ av + s++
  Csa06g005070.1 27 ETKQQRAVACSKRRQTVFSKAADLCHLSGANMAVFVTSPS 66
                    77999********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-141675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.9981666IPR002100Transcription factor, MADS-box
CDDcd002663.86E-1917101No hitNo description
SuperFamilySSF554553.01E-1618112IPR002100Transcription factor, MADS-box
PfamPF003191.1E-82769IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MPSLSTNASE STMKKGTKRK IEIKKRETKQ QRAVACSKRR QTVFSKAADL CHLSGANMAV  60
FVTSPSEISD VVYSFSGYSP AQEIADCYLN LKPPPKIEVK HQSTKLGFER VKKHVMACLE  120
KKEKSQSVVS NTEQNPITDE DCDRGFDLNS SPST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g005070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019085726.13e-99PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLR0HBN43e-60R0HBN4_9BRAS; Uncharacterized protein
STRINGXP_010425202.11e-90(Camelina sativa)
STRINGXP_010502432.11e-90(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27130.11e-48AGAMOUS-like 39