PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g004460.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 314aa    MW: 34221.3 Da    PI: 7.0485
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g004460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.3e-32115170156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Csa06g004460.1 115 KARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 170
                     68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.682112172IPR017930Myb domain
SuperFamilySSF466891.52E-17113173IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-28113173IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-27115170IPR006447Myb domain, plants
PfamPF002492.3E-7117168IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MTTTQLWSES ETKPKNIDST ADQSLHKDEI ASSPKLGHFD AKQRNGNGAF LPFSKEHSLP  60
ELALSTEVKR VSPTSEHTNG HDGNDESMIN NDTNNNNNNS NNNGVSSTTS QSNRKARRCW  120
SPDLHRRFVQ ALQMLGGSQV ATPKQIRELM KVDGLTNDEV KSHLQKYRLH TRRPSPSPQT  180
SGGPGPHLVV LGGIWVPPEY TTAHGGTPTL YHHQVHHHHT STAGPPPPHF CSSQEFYTTP  240
PPPQSLHHHH FQTFNGSSGA ASTDSTHNQL THSAADEEKS PESGGGEKKG LAALREEGED  300
QSNVNGSEIT LKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-14115168255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-14115168255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-14115168154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-14115168154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-14115168154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-14115168154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-14115168255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-14115168255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-14115168255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-14115168255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-14115168255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-14115168255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g004460.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216620.0AK221662.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-70-E23.
GenBankAY0605590.0AY060559.1 Arabidopsis thaliana At2g03500/T4M8.7 mRNA, complete cds.
GenBankAY1336300.0AY133630.1 Arabidopsis thaliana At2g03500/T4M8.7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518594.10.0PREDICTED: myb family transcription factor EFM-like, partial
SwissprotQ9ZQ850.0EFM_ARATH; Myb family transcription factor EFM
TrEMBLD7LQI30.0D7LQI3_ARALL; Myb family transcription factor
STRINGXP_010518594.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71342843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-143G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]