PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g003110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 215aa MW: 24772.6 Da PI: 9.8634 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.2 | 4.4e-18 | 14 | 60 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 ien+s r+ tf kR++g KK +ELSvLC++e++ +i+s ++ + e Csa06g003110.1 14 YIENDSMRKATFNKRKKGFVKKIHELSVLCGIEACAVIYSLSNSVSE 60 59**************************************9999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.35E-23 | 5 | 89 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.5E-24 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.502 | 5 | 65 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.78E-28 | 6 | 89 | No hit | No description |
PRINTS | PR00404 | 6.6E-12 | 7 | 27 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-16 | 15 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-12 | 27 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-12 | 42 | 63 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MVNIMTRKKL NLSYIENDSM RKATFNKRKK GFVKKIHELS VLCGIEACAV IYSLSNSVSE 60 VWPSNLGVKN AVGKFEMLTD MEQEKKMVNH EGFLKQNISK AMGNNKRKMK NNAERMMKEA 120 MFELLGGKGD RFKLPNIHRE DLCKYIDQYL NELYHHKNKI LRQSHVEYGE SSEAATNVMA 180 PTSSVEVNFQ FFPTLNVSNS LYYYPVQIKS QFSY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g003110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010518578.1 | 1e-159 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 8e-46 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | S6B403 | 2e-96 | S6B403_ARAHA; Agamous-like MADS-box protein AGL45 | ||||
STRING | XP_010518578.1 | 1e-159 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 9e-96 | M-type_MADS family protein |
Publications ? help Back to Top | |||
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