PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g003010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 372aa MW: 41971.2 Da PI: 7.2906 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.1 | 6.1e-20 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en rq tf+kR+ gilKKA+ELS+LCd+++ +++fs+tgk Csa06g003010.1 10 KLENPNGRQSTFAKRKSGILKKANELSILCDIDIVLLMFSPTGK 53 5689999***********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.997 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.0E-30 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.11E-25 | 2 | 81 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-25 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-17 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-18 | 11 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-17 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-17 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MGRVKLKIKK LENPNGRQST FAKRKSGILK KANELSILCD IDIVLLMFSP TGKAALCCGT 60 RSMEEVIAKF SQVTPQERTK RKFESLENLK KTFQKLDHDV NIREFIASSN STIEDLSAQA 120 RILQARISEI HGRLSYWTEP DKINNVEHLG QLEISIRQSI DQLRAHKEHF GQQQQAMQID 180 NANFVKDWST CSMQDGIQIP LEQQLQSMSW ILNSNTTNIV TEEHNPIPQR EVECSASSSF 240 GSYPGYFGTG KSPEITISGQ ETSFLDELNT GQLKPQPSSH QQFTNNNITP YNPNLHNDMN 300 HQPTLPPPPP QVYIPMNQRE YHMNGFFKAP PPGSSAYNNT NQTRFGSSSS SLPCSLSMFD 360 EYLFSQMQQP N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 6e-13 | 1 | 91 | 1 | 90 | MEF2 CHIMERA |
6byy_B | 6e-13 | 1 | 91 | 1 | 90 | MEF2 CHIMERA |
6byy_C | 6e-13 | 1 | 91 | 1 | 90 | MEF2 CHIMERA |
6byy_D | 6e-13 | 1 | 91 | 1 | 90 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g003010.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ446459 | 0.0 | DQ446459.1 Arabidopsis thaliana clone pENTR221-At2g03060 MADS-box family protein (At2g03060) mRNA, complete cds. | |||
GenBank | DQ652954 | 0.0 | DQ652954.1 Arabidopsis thaliana clone 0000017365_0000012150 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010514072.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL30 isoform X2 | ||||
Swissprot | Q1PFA4 | 0.0 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | D7LQC8 | 0.0 | D7LQC8_ARALL; Predicted protein | ||||
STRING | XP_010514071.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8754 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 0.0 | AGAMOUS-like 30 |
Publications ? help Back to Top | |||
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