PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g003010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 372aa    MW: 41971.2 Da    PI: 7.2906
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g003010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.16.1e-201053245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    + en   rq tf+kR+ gilKKA+ELS+LCd+++ +++fs+tgk
  Csa06g003010.1 10 KLENPNGRQSTFAKRKSGILKKANELSILCDIDIVLLMFSPTGK 53
                    5689999***********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.997153IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-30160IPR002100Transcription factor, MADS-box
CDDcd002661.11E-25281No hitNo description
SuperFamilySSF554551.96E-25293IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-17323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-181153IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGRVKLKIKK LENPNGRQST FAKRKSGILK KANELSILCD IDIVLLMFSP TGKAALCCGT  60
RSMEEVIAKF SQVTPQERTK RKFESLENLK KTFQKLDHDV NIREFIASSN STIEDLSAQA  120
RILQARISEI HGRLSYWTEP DKINNVEHLG QLEISIRQSI DQLRAHKEHF GQQQQAMQID  180
NANFVKDWST CSMQDGIQIP LEQQLQSMSW ILNSNTTNIV TEEHNPIPQR EVECSASSSF  240
GSYPGYFGTG KSPEITISGQ ETSFLDELNT GQLKPQPSSH QQFTNNNITP YNPNLHNDMN  300
HQPTLPPPPP QVYIPMNQRE YHMNGFFKAP PPGSSAYNNT NQTRFGSSSS SLPCSLSMFD  360
EYLFSQMQQP N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-13191190MEF2 CHIMERA
6byy_B6e-13191190MEF2 CHIMERA
6byy_C6e-13191190MEF2 CHIMERA
6byy_D6e-13191190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g003010.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464590.0DQ446459.1 Arabidopsis thaliana clone pENTR221-At2g03060 MADS-box family protein (At2g03060) mRNA, complete cds.
GenBankDQ6529540.0DQ652954.1 Arabidopsis thaliana clone 0000017365_0000012150 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514072.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X2
SwissprotQ1PFA40.0AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLD7LQC80.0D7LQC8_ARALL; Predicted protein
STRINGXP_010514071.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87542539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.20.0AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]