PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g002650.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ZF-HD
Protein Properties Length: 322aa    MW: 36015.3 Da    PI: 8.2116
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g002650.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.61.1e-3192146459
     ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                     ++YkeClkNhAas Gg+a+DGCgEfmps ge+g+++al+C+AC+CHRnFHRre e 
  Csa06g002650.1  92 IKYKECLKNHAASKGGNAIDGCGEFMPS-GEDGSIEALTCSACNCHRNFHRREIEG 146
                     79*************************9.999*********************986 PP
2Homeobox14.18.2e-05231286152
                     TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 
                     +r Rt+ft+eq e + ++ e    k +   +++ ++L +++g+  r+ kvW +N +
  Csa06g002650.1 231 KRFRTKFTQEQKEKMMSFAErvgwKMQRQEESDVQQLCQEIGIMRRVLKVWMHNNK 286
                     789************876667777789999999*********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2592154IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.7E-2992144IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.1E-3193144IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.29594143IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.79E-20218291IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-31224292IPR009057Homeodomain-like
PROSITE profilePS500719.118228292IPR001356Homeobox domain
TIGRFAMsTIGR015651.7E-26230286IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEIASQEDPT PINTSYGNSG GGLGNMIHHH HANSAPTSLN ITTPNPLQVS SNGNGLGKNH  60
DYSHHHHHHH HVGYNIMVSN NNNIKKEKPV VIKYKECLKN HAASKGGNAI DGCGEFMPSG  120
EDGSIEALTC SACNCHRNFH RREIEGEEKT FFSPYLNHHQ PPPPQRKLMF HHKMIKSPLP  180
QQMIMPIGVA TGGSNSESED LMEEDGGGSL TFRHPPPPPP PPYSYGHNQK KRFRTKFTQE  240
QKEKMMSFAE RVGWKMQRQE ESDVQQLCQE IGIMRRVLKV WMHNNKHHLS KKSNNINDNV  300
DQLGNKDVNN ATTENLASTS P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-212302871774ZF-HD homeobox family protein
1wh7_A1e-212312871874ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g002650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0041360.0AC004136.3 Arabidopsis thaliana chromosome 2 BAC T8K22 genomic sequence, complete sequence.
GenBankAY0915150.0AY091515.1 Arabidopsis thaliana hypothetical protein At2g02540/T822.16 mRNA, complete cds.
GenBankAY7738340.0AY773834.1 Arabidopsis thaliana clone pENTR221-At2g02540 hypothetical protein (At2g02540) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514025.10.0PREDICTED: zinc-finger homeodomain protein 3
RefseqXP_010514026.10.0PREDICTED: zinc-finger homeodomain protein 3
SwissprotO647221e-174ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLR0FPG30.0R0FPG3_9BRAS; Uncharacterized protein
STRINGXP_010514025.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.11e-166homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]