PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g002590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 378aa    MW: 42723 Da    PI: 6.3245
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g002590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.82.3e-155297248
             NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                    +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp
  Csa06g002590.1 52 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELP 97
                    79***************************.89**************8 PP
2NAM58.71.9e-189814581128
             NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     gyWkatg d+ + s++++ +glkktLvfy+g+apkg++t+W+m+eyrl
  Csa06g002590.1  98 GYWKATGADRMIRSETSRPIGLKKTLVFYSGKAPKGTRTSWIMNEYRL 145
                     9*********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.36911166IPR003441NAC domain
SuperFamilySSF1019415.62E-3951166IPR003441NAC domain
PfamPF023657.8E-1853145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAIVSSTTSI IPMSTQVNNN EKGIEEDDHR GGHESNVQND DEADDHDHDM VMPGFRFHPT  60
EEELIEFYLR RKVEGKRFNV ELITFLDLYR YDPWELPGYW KATGADRMIR SETSRPIGLK  120
KTLVFYSGKA PKGTRTSWIM NEYRLPHHET EKYQKAEISL CRVYKRPGVE DHPSLPRSLS  180
TRHHNNHNSS SRQALRQQQH HSSSSNHSEN NLNNNTNNLE KLSTEYSGDG STTTTTNSNS  240
DVTIALANQN IYRPMPYGAS NNTSIISTSN QEDDEAAIVD DLQRLVNYQI SDGGNINHQY  300
FQIAQQFHHN QQQNANANAL QLVAAATTAA ALTPRTQATL AMSMIPTGTI PNSALWDMWN  360
PIIPDGNRDH YTINPFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-33421668165NO APICAL MERISTEM PROTEIN
1ut4_B3e-33421668165NO APICAL MERISTEM PROTEIN
1ut7_A3e-33421668165NO APICAL MERISTEM PROTEIN
1ut7_B3e-33421668165NO APICAL MERISTEM PROTEIN
4dul_A3e-33421668165NAC domain-containing protein 19
4dul_B3e-33421668165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g002590.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3603080.0AF360308.1 Arabidopsis thaliana putative NAM protein (At2g02450) mRNA, partial cds.
GenBankBT0008740.0BT000874.1 Arabidopsis thaliana clone C104984 putative NAM (no apical meristem) protein (At2g02450) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514016.10.0PREDICTED: NAC domain-containing protein 35 isoform X1
SwissprotQ9ZVP80.0NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A178W0N40.0A0A178W0N4_ARATH; NAC035
STRINGXP_010514016.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54362750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-108NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]