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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa06g001930.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
BBR-BPC |
Protein Properties |
Length: 288aa MW: 31944.4 Da PI: 10.2869 |
Description |
BBR-BPC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa06g001930.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GAGA_bind | 359.1 | 8.9e-110 | 1 | 287 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd......maflqrdkalaernkalverdnkllal 84
mdddg+ rn+gyyepa a++k nlglqlms+i + ++k+ re+nl ++++++++++r+ m++ +++++ ++dnk++++
Csa06g001930.1 1 MDDDGF--RNWGYYEPAaATFKGNLGLQLMSTI-DGNTKPflpgRESNL-MIGSNGSYHPREheasmpMNY----SWINQ------PKDNKFFNM 81
99**99..9*******999**************.8999999********.************998888888....*****......********* PP
GAGA_bind 85 llvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179
l++++ p++++v+s+t+ +s+q+ +++ ++ s +e + + + e+ +++ k++k++ + +++ pk+kk +k+k+ ++ v+
Csa06g001930.1 82 LPIST------PNYSNVMSETSGSNSMQMRHQSVVTTSRFEETPIQPPPPREDETVQPSGKKRKMRGSITTPTAPKAKKPRKPKE-----ESGVT 165
**766......99****************99988888888744444444444444555556666666666666666666666666.....34455 PP
GAGA_bind 180 kesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274
++ +++r+k +kks+d+v+ngvs+D+s+lPvPvC+CtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRi+grKmSqgafkk+LekLa+
Csa06g001930.1 166 NNVQQQRVKPPKKSVDVVINGVSMDISGLPVPVCTCTGTPQQCYRWGCGGWQSACCTTNISMYPLPMSTKRRGARISGRKMSQGAFKKVLEKLAT 260
55556889*************************************************************************************** PP
GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301
eGy+++n++DLk+hWA+HGtnkfvtir
Csa06g001930.1 261 EGYSFGNAIDLKSHWARHGTNKFVTIR 287
**************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 288 aa
Download sequence Send
to blast |
MDDDGFRNWG YYEPAAATFK GNLGLQLMST IDGNTKPFLP GRESNLMIGS NGSYHPREHE 60 ASMPMNYSWI NQPKDNKFFN MLPISTPNYS NVMSETSGSN SMQMRHQSVV TTSRFEETPI 120 QPPPPREDET VQPSGKKRKM RGSITTPTAP KAKKPRKPKE ESGVTNNVQQ QRVKPPKKSV 180 DVVINGVSMD ISGLPVPVCT CTGTPQQCYR WGCGGWQSAC CTTNISMYPL PMSTKRRGAR 240 ISGRKMSQGA FKKVLEKLAT EGYSFGNAID LKSHWARHGT NKFVTIR*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |