PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g001330.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HD-ZIP

Protein Properties

Length: 202aa MW: 22823.7 Da PI: 7.565

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g001330.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.6e-18	66	120	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq + Le+ F++n++++ +++e LA++l L rq+ vWFqNrRa+ k Csa06g001330.1 66 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALATHLMLRPRQIEVWFQNRRARSK 120 78889************************************************98 PP
2	HD-ZIP_I/II	118.4	4e-38	66	154	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl++eq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+ Csa06g001330.1 66 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALATHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNHRLHREVEELRA 154 69*************************************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.7E-19	47	120	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-18	48	123	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.892	62	122	IPR001356	Homeobox domain
SMART	SM00389	9.0E-17	64	126	IPR001356	Homeobox domain
CDD	cd00086	2.42E-15	65	123	No hit	No description
Pfam	PF00046	8.8E-16	66	120	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	97	120	IPR017970	Homeobox, conserved site
SMART	SM00340	7.0E-22	122	165	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.4E-9	122	156	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MAILPENSSN LDLTISVPGF SSSPPSVSDE GSGGGREQLK LDMNRVPSSE DGDDEEFSHD 60 GSAPPRKKLR LTREQSRLLE DSFRQNHTLN PKQKEALATH LMLRPRQIEV WFQNRRARSK 120 LKQTEMECEY LKRWFGSLTE QNHRLHREVE ELRAMKVGPP TVNSASSLTM CPRCERVTTP 180 ASPASMAVPA REKFPPQERE D*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	122	RRARSKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g001330.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ431181	0.0	AJ431181.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper (Athb17 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019102158.1	1e-147	PREDICTED: homeobox-leucine zipper protein ATHB-17-like isoform X1
Swissprot	Q8S9N6	1e-128	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	R0HHK2	1e-132	R0HHK2_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010424911.1	1e-143	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4890	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	1e-113	homeobox-leucine zipper protein 17

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]