PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06498s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 137aa    MW: 14962.7 Da    PI: 10.1006
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06498s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.6e-182372255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr +k +g+Wv+eIr+p +   + r++lg+f t+e+Aa a++ a+  ++g
  Csa06498s010.1 23 AYRGVRKRK-WGKWVSEIREPGT---KNRIWLGSFETPEMAATAYDVAAFHFRG 72
                    69****999.**********833...59*********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-232281IPR016177DNA-binding domain
CDDcd000184.70E-312282No hitNo description
SMARTSM003803.9E-382386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-322381IPR001471AP2/ERF domain
PfamPF008473.0E-112372IPR001471AP2/ERF domain
PROSITE profilePS5103223.632380IPR001471AP2/ERF domain
PRINTSPR003675.4E-132435IPR001471AP2/ERF domain
PRINTSPR003675.4E-136282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MAGLRNSGNS DKAENEGKGV PSAYRGVRKR KWGKWVSEIR EPGTKNRIWL GSFETPEMAA  60
TAYDVAAFHF RGREARLNFP ELASSLPRPV DSSSDSIRMA AHEATLCRRT EASESAMQVD  120
SSSSSTVGPT MVSLSPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-172480663ATERF1
3gcc_A2e-172480663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06498s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0161621e-166AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBankAC0161631e-166AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence.
GenBankBT0107641e-166BT010764.1 Arabidopsis thaliana At1g71450 gene, complete cds.
GenBankBT0117901e-166BT011790.1 Arabidopsis thaliana At1g71450 mRNA, complete cds.
GenBankCP0026841e-166CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427981.12e-95PREDICTED: ethylene-responsive transcription factor ERF021-like
RefseqXP_010471159.12e-95PREDICTED: ethylene-responsive transcription factor ERF021
RefseqXP_019098576.16e-96PREDICTED: ethylene-responsive transcription factor ERF021, partial
SwissprotQ9C9I22e-90ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLD7KYV81e-82D7KYV8_ARALL; Uncharacterized protein
STRINGXP_010427981.19e-95(Camelina sativa)
STRINGXP_010471159.19e-95(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.16e-93ERF family protein