PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g095020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 537aa    MW: 60962.7 Da    PI: 4.8002
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g095020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like65.11.3e-20234289152
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelm....kvkgLtlehvkSHLQk 52 
                     kpr++W+ eLH++F  ave++G  ekA Pk+il++m    +v+gLt+++v+SHLQk
  Csa05g095020.1 234 KPRMKWSAELHQKFEAAVEKIGSVEKAYPKQILKCMqedmNVQGLTRNNVASHLQK 289
                     79*******************************985333389*************9 PP
2Response_reg40.61.3e-14441671105
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHT.TT................SEEE CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reee.pk................lpii 75 
                     vl+vd + + +  +++++ +  y +v+  d+geea++ l +++  +Dl+l D  mp+++Gl++l +i +e + p                   + 
  Csa05g095020.1  44 VLLVDADSNSLLPMTNLMAQYSY-QVTKYDNGEEAMAFLMKSKheIDLVLWDFHMPDINGLDALNTIgKEMDlPVvtrvyikeisnlpyvnYSCP 137
                     89999999999999999999***.***************666667**********************8888883333344444455444445556 PP

                     EEESTTTHHHHHHHHHTTESEEEESS--HH CS
    Response_reg  76 vvtahgeeedalealkaGakdflsKpfdpe 105
                     v++   ++e++ +  k Ga dfl+Kp+++e
  Csa05g095020.1 138 VMSHDHKKETVMASTKNGACDFLVKPVSKE 167
                     777777778888888999999999998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.2E-2641184No hitNo description
SuperFamilySSF521721.57E-2041183IPR011006CheY-like superfamily
SMARTSM004481.1E-942172IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011028.42143177IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.8E-1044118IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.07E-1345172No hitNo description
Gene3DG3DSA:1.10.10.604.0E-20232289IPR009057Homeodomain-like
SuperFamilySSF466895.55E-12232293IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-17234289IPR006447Myb domain, plants
PfamPF002494.6E-6236289IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MSVSANIVDE NSRNLPKEVL ACDDEIEFPI NDDDEEFPTT SIRVLLVDAD SNSLLPMTNL  60
MAQYSYQVTK YDNGEEAMAF LMKSKHEIDL VLWDFHMPDI NGLDALNTIG KEMDLPVVTR  120
VYIKEISNLP YVNYSCPVMS HDHKKETVMA STKNGACDFL VKPVSKEVVA VVWQHVYRKR  180
MSKSGLDKPG ESYTIESDSD EYEGLLREDN LYQSNGEGSK NTCDQKEDMS SAKKPRMKWS  240
AELHQKFEAA VEKIGSVEKA YPKQILKCMQ EDMNVQGLTR NNVASHLQKP LVRANNFQLL  300
RWQKYRQSSN KKASTPQESQ EDFDWRNIGQ DPPDFATSNP PLSSTRAPYF MNDFQAAAVP  360
RTSYFTTDQT AQPIPYLSNG YNLPMNNKNN YFMASQFQQP LQQQQYQYPC LNLPSILTKQ  420
ESGHVSSAME TSDTLIYNNN SSFPNFDHDE FFLPAEFTNN NNHDQFPPAG MNHNHDQFPP  480
AGLNNNQFPP AGLNNSQFPP SGLNNNQFPP AVFNNNNRDQ FQPAGFNNNF DQTCRS*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g095020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1626511e-101AL162651.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9.
GenBankCP0026861e-101CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513794.20.0PREDICTED: putative two-component response regulator ARR20
SwissprotQ9LZJ81e-162ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLR0HLD90.0R0HLD9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010513794.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.11e-118response regulator 20