PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g094340.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 403aa MW: 44607.2 Da PI: 5.8974 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.8 | 2e-08 | 218 | 259 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+ R++iN+++ +L++llP+ +K + ++L +A++Y+ +Lq Csa05g094340.2 218 ERKQRNDINKKLRTLQDLLPNY-----QKDDNESMLDEAINYMTNLQ 259 9********************9.....8****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.13E-7 | 205 | 263 | No hit | No description |
PROSITE profile | PS50888 | 12.62 | 209 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-10 | 212 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-12 | 217 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0029 | 217 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-6 | 218 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MHESESLYWR GHMSKYNAKG DKKKKMLNDQ QYMELVFENG QILAKGQRSN VSLHNQRTKS 60 IMDLYEAEYN EDFMKSIIHG DGAIKNLGDT QVVPQNHVAA PLPETTMLET NKHVDDSTLI 120 ETLKSSSSKR MMVDYDDNRK IEFLPPDEQS VVAERTVGSG FDASSSAGFT EDSEGSTYLS 180 SSLDDESDDA RPRRVPPART RKALVKRKRN AEAYDSPERK QRNDINKKLR TLQDLLPNYQ 240 KDDNESMLDE AINYMTNLQL QVQGLQMMTM GNRFVAPSMM LPLGPHYSQM GVAMGMGMQM 300 GASQRLPAPV LGACLPGINN SANTLTFLNH PGLMMPMQNS APPFTPTEQC SLQSVPPSCA 360 TFPNQIPNPT FLSNSDGATP YTRNQGPLTD GGILSVKESG NP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g094340.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019093081.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: transcription factor PIF6-like | ||||
Swissprot | Q8L5W7 | 0.0 | PIF6_ARATH; Transcription factor PIF6 | ||||
TrEMBL | R0HJ56 | 0.0 | R0HJ56_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010512592.1 | 0.0 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62090.2 | 1e-162 | phytochrome interacting factor 3-like 2 |