PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g094340.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 411aa MW: 45593.4 Da PI: 6.1181

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g094340.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.9	6.5e-07	230	267	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R++iN+++ +L++llP+ +K + ++L +A++Y+ +Lq Csa05g094340.1 230 RNDINKKLRTLQDLLPNY-----QKDDNESMLDEAINYMTNLQ 267 9**************9.....8**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.366	217	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-10	227	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.9E-9	227	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-4	228	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.28E-6	230	271	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010017	Biological Process	red or far-red light signaling pathway
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MHESESLYWR GHMSKYNAKG DKKKKMLNDQ QYMELVFENG QILAKGQRSN VSLHNQRTKS 60 IMDLYEAEYN EDFMKSIIHG DGAIKNLGDT QVVPQNHVAA PLPETTMLET NKHVDDSTLI 120 ETLKSSSSKR MMVDYDDNRK IEFLPPDEQS VVAERTVGSG FDASSSAGFT EDSEGSTFFF 180 VSTQSLDDES DDARPRRVPP ARTRKALVKR KRNAEAYDSP ERYCGKQKQR NDINKKLRTL 240 QDLLPNYQKD DNESMLDEAI NYMTNLQLQV QGLQMMTMGN RFVAPSMMLP LGPHYSQMGV 300 AMGMGMQMGA SQRLPAPVLG ACLPGINNSA NTLTFLNHPG LMMPMQNSAP PFTPTEQCSL 360 QSVPPSCATF PNQIPNPTFL SNSDGATPYT RNQGPLTDGG ILSVKESGNP *

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MHESESLYWR GHMSKYNAKG DKKKKMLNDQ QYMELVFENG QILAKGQRSN VSLHNQRTKS  60
IMDLYEAEYN EDFMKSIIHG DGAIKNLGDT QVVPQNHVAA PLPETTMLET NKHVDDSTLI  120
ETLKSSSSKR MMVDYDDNRK IEFLPPDEQS VVAERTVGSG FDASSSAGFT EDSEGSTFFF  180
VSTQSLDDES DDARPRRVPP ARTRKALVKR KRNAEAYDSP ERYCGKQKQR NDINKKLRTL  240
QDLLPNYQKD DNESMLDEAI NYMTNLQLQV QGLQMMTMGN RFVAPSMMLP LGPHYSQMGV  300
AMGMGMQMGA SQRLPAPVLG ACLPGINNSA NTLTFLNHPG LMMPMQNSAP PFTPTEQCSL  360
QSVPPSCATF PNQIPNPTFL SNSDGATPYT RNQGPLTDGG ILSVKESGNP *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g094340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019093081.1	0.0	PREDICTED: LOW QUALITY PROTEIN: transcription factor PIF6-like
Swissprot	Q8L5W7	0.0	PIF6_ARATH; Transcription factor PIF6
TrEMBL	R0HJ56	0.0	R0HJ56_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010512592.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13423	14	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62090.2	1e-159	phytochrome interacting factor 3-like 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Adams E,Diaz C,Hong JP,Shin R 14-3-3 proteins participate in light signaling through association with PHYTOCHROME INTERACTING FACTORs. Int J Mol Sci, 2014. 15(12): p. 22801-14 [PMID:25501334] Galvão VC,Collani S,Horrer D,Schmid M Gibberellic acid signaling is required for ambient temperature-mediated induction of flowering in Arabidopsis thaliana. Plant J., 2015. 84(5): p. 949-62 [PMID:26466761] Gomez EJ,Gerhardt K,Judd J,Tabor JJ,Suh J Light-Activated Nuclear Translocation of Adeno-Associated Virus Nanoparticles Using Phytochrome B for Enhanced, Tunable, and Spatially Programmable Gene Delivery. ACS Nano, 2016. 10(1): p. 225-37 [PMID:26618393] Ochoa-Fernandez R, et al. Optogenetics in Plants: Red/Far-Red Light Control of Gene Expression. Methods Mol. Biol., 2016. 1408: p. 125-39 [PMID:26965120] Gangl R,Tenhaken R Raffinose Family Oligosaccharides Act As Galactose Stores in Seeds and Are Required for Rapid Germination of Arabidopsis in the Dark. Front Plant Sci, 2016. 7: p. 1115 [PMID:27507985] Paik I,Kathare PK,Kim JI,Huq E Expanding Roles of PIFs in Signal Integration from Multiple Processes. Mol Plant, 2017. 10(8): p. 1035-1046 [PMID:28711729]