PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g094080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 243aa MW: 28610.8 Da PI: 5.1438 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.1 | 6.5e-18 | 34 | 85 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq++ Le+ Fe++ + +++ + A++lgL+ rqV +WFqN+Ra++k Csa05g094080.1 34 KRFSEEQIKSLERIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWK 85 68*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.9 | 6.7e-39 | 32 | 123 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +++r+s+eq+k+LE+ Fe+e++Lep++Kv++areLglqprqva+WFqn+RAR+ktkqlEkdy+ L+++y++l+++ e ++ke+++L +el++ Csa05g094080.1 32 NQKRFSEEQIKSLERIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQLEKDYNILRASYNNLASQFEIMKKEKQALVSELER 123 589************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.82E-17 | 16 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.4E-13 | 24 | 91 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 17.006 | 27 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.42E-13 | 33 | 88 | No hit | No description |
Pfam | PF00046 | 2.6E-15 | 34 | 85 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-18 | 34 | 94 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.8E-5 | 58 | 67 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 62 | 85 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.8E-5 | 67 | 83 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.4E-16 | 87 | 127 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEEGDFFNCC FSETNSGMTM MMNKKKMKKS YNQKRFSEEQ IKSLERIFES ETRLEPRKKV 60 QVARELGLQP RQVAIWFQNK RARWKTKQLE KDYNILRASY NNLASQFEIM KKEKQALVSE 120 LERLKNEEIH KPKEERDHEC CGEQGVALSS STESHNGKCE PEVRLINQGI VLCNDDDGDN 180 NNIKTEYFRF EEETDHHHEL MNIVEQPDDS CLTSSDNWGG FNSDSLLDQS SSNYHNWWEF 240 WT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g094080.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269|PubMed:15369784, ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY059828 | 0.0 | AY059828.1 Arabidopsis thaliana homeobox-leucine zipper protein ATHB-12 (F21F14.6) mRNA, complete cds. | |||
GenBank | AY087187 | 0.0 | AY087187.1 Arabidopsis thaliana clone 32615 mRNA, complete sequence. | |||
GenBank | BT002206 | 0.0 | BT002206.1 Arabidopsis thaliana homeobox-leucine zipper protein ATHB-12 (At3g61890) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010512567.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
Swissprot | Q9M276 | 1e-123 | ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12 | ||||
TrEMBL | R0H5X0 | 1e-133 | R0H5X0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010512567.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2498 | 28 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 1e-121 | homeobox 12 |
Publications ? help Back to Top | |||
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