PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g093540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 280aa    MW: 31669.4 Da    PI: 4.4492
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g093540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3573.6e-1821103997
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       + ++   +p +f+e+   +   + t +l+ + gr W+v +  +k ++++++t+GW++F+++++L +g+ ++F +dg+++f   v+vf
  Csa05g093540.1  21 TCMCLDHQAIPLSFMEHLADP--LPNTAKLQGTGGRDWTVSM--KKIRDGVYFTAGWSKFAQDHELVDGEYLTFVYDGNRTF--EVSVF 103
                     555566678******666655..889****************..*********************************98888..77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100179.32E-1911103No hitNo description
SuperFamilySSF1019362.16E-2111107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-2111105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.01513106IPR003340B3 DNA binding domain
SMARTSM010192.2E-1713106IPR003340B3 DNA binding domain
PfamPF023624.1E-1525103IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-8180271IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-6180271IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.7184274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAEHDDDVLL PRFFKLYNKL TCMCLDHQAI PLSFMEHLAD PLPNTAKLQG TGGRDWTVSM  60
KKIRDGVYFT AGWSKFAQDH ELVDGEYLTF VYDGNRTFEV SVFGRLGCRE TRAEAETLEL  120
SGSSSDSEED EEEPSTDVEY DISLGEDEEI SQSLSPLEEE ETESDAAAVF EGNVDMKALT  180
NPHFPTTLKD RNTELIIPAS VVRENELIFG DSVKYIDGEG TLVGLRCKWA VDTVRFKGWN  240
RICRRNKLEK HQDTVECELL HDREKMVHSI RVHVIRGTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-183010826104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g093540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010512501.10.0PREDICTED: B3 domain-containing protein REM20-like
SwissprotQ8LAV51e-110REM20_ARATH; B3 domain-containing protein REM20
TrEMBLR0HPM71e-145R0HPM7_9BRAS; Uncharacterized protein
STRINGXP_010512501.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-57B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]