PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g092440.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 618aa    MW: 67227 Da    PI: 4.4792
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g092440.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS320.24.2e-9826361619374
            GRAS  19 laqalLarlselaspdgd......pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleave 107
                     laq +Larl+++ + d++      p++R+a+y+teAL++ l++      ++ +ps ++++n + ++aa+++fse+sP+l+f ++taNq+Ile+++
  Csa05g092440.1 263 LAQGILARLNHNLNDDDTnnnpkpPLHRAASYITEALHSLLQD------SSSQPSLSPPQNLIFRIAAYRAFSETSPFLQFVNFTANQTILESLQ 351
                     89**********8888866888899******************......778899999999********************************** PP

            GRAS 108 geervHiiDfdisqGlQWpaLlqaLa.sRp...egppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                     g++r+Hi+Dfdi++G+QW++L+q+L+ +R+   ++ppsl+iT+++sp+++ ++ el+ t+e+L++fA+e gv+fe+++l  + l + +++ L++ 
  Csa05g092440.1 352 GSDRIHIVDFDIGYGGQWASLIQELSgKRNrssSSPPSLKITAFASPSTVsDEFELRFTEENLRSFAAESGVSFEIELLNLEILLNPTYWPLSLF 446
                     **************************7666777889************9999***************************8888888899999887 PP

            GRAS 198 p...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvEre 288
                     +   +Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+ n+++F +++++al+yy++l++sl+++   ++e+++ vEr+
  Csa05g092440.1 447 RsseKEAIAVNLPISSVVSG--------YLPLILRFLKQISPNVVVCSDRTCDRnNDAPFPNGVINALQYYTTLLESLDSS---NAEAATRVERF 530
                     7777*********9655554........5677**********************99**********************999...78********* PP

            GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee...sgslvlgWkdrpLvsvSaWr 374
                     +++++i+++++++ +     +e+   Wr+ ++++GF+pv ls++a++qa++ll++ +++g+++e++     slvl+W++++Lv+vSaW+
  Csa05g092440.1 531 CVQPSIQKLLTNRYRC---WMERTPPWRSLFGQCGFSPVMLSQTAETQAEYLLQRNPMRGFHLEKRqssLSSLVLCWQRKELVAVSAWK 616
                     **************98...889999***************************************8822245678**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.588219593IPR005202Transcription factor GRAS
PfamPF035141.5E-95263616IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MPLPFEQFQG KGFLGFLDSE KLLHGRQVVV EEDLCFVVNN GGFSEPTSVL DSVRSPSPFV  60
SSSTTTLSSS HGGPSGGAAA AAADFSGADE KCDPMGFEDL DGVLSGGSPG QEESILRLIM  120
SGGGDVVDPG SEFVGFDTGS GSDPVIDNPN PLFGGYGFPF HDATNPEILI NPSPDFFSDP  180
PSSPPPPPAK RLNSGQPGSQ QWAFQFSDPG HESHDPFLTP PKLAGEDEHD QSTLIIDQLF  240
SAAVELIGTT TNGGGDNNPN PILAQGILAR LNHNLNDDDT NNNPKPPLHR AASYITEALH  300
SLLQDSSSQP SLSPPQNLIF RIAAYRAFSE TSPFLQFVNF TANQTILESL QGSDRIHIVD  360
FDIGYGGQWA SLIQELSGKR NRSSSSPPSL KITAFASPST VSDEFELRFT EENLRSFAAE  420
SGVSFEIELL NLEILLNPTY WPLSLFRSSE KEAIAVNLPI SSVVSGYLPL ILRFLKQISP  480
NVVVCSDRTC DRNNDAPFPN GVINALQYYT TLLESLDSSN AEAATRVERF CVQPSIQKLL  540
TNRYRCWMER TPPWRSLFGQ CGFSPVMLSQ TAETQAEYLL QRNPMRGFHL EKRQSSLSSL  600
VLCWQRKELV AVSAWKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-3028761639375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g092440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1622950.0AL162295.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T4C21.
GenBankAY0640620.0AY064062.1 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds.
GenBankAY0963720.0AY096372.1 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010512394.10.0PREDICTED: scarecrow-like protein 22
SwissprotQ9M0000.0SCL22_ARATH; Scarecrow-like protein 22
TrEMBLR0H1P50.0R0H1P5_9BRAS; Uncharacterized protein
STRINGXP_010512394.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150661619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60630.10.0GRAS family protein
Publications ? help Back to Top
  1. Gustafson AM, et al.
    ASRP: the Arabidopsis Small RNA Project Database.
    Nucleic Acids Res., 2005. 33(Database issue): p. D637-40
    [PMID:15608278]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]