PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g090100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Nin-like | ||||||||
Protein Properties | Length: 928aa MW: 102566 Da PI: 5.3664 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.6 | 3e-29 | 573 | 623 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Csa05g090100.1 573 EKNVSLNVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 623 89***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.097 | 557 | 643 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.9E-27 | 575 | 623 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.28E-20 | 817 | 911 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.2E-21 | 825 | 908 | No hit | No description |
SMART | SM00666 | 1.3E-21 | 828 | 911 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 18.698 | 828 | 903 | IPR000270 | PB1 domain |
CDD | cd06407 | 8.61E-32 | 829 | 910 | No hit | No description |
Pfam | PF00564 | 5.4E-16 | 829 | 910 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 928 aa Download sequence Send to blast |
MENPSREKGF CFPDTPVEEM EMDGWVKSLI FEEDMLTSSS STSELMNFES FASWCNNIPS 60 AATDILFSQY GLSTSQSTTP FGGHSYVGEK RPVHEISSQF HCLSDTEKLN GKRIKGNNNN 120 QTSSLTTGAV DYSVVPRSLS HTLDEKMIKA LSLFMEFSGE GILAQFWTPS RKGDQYMLST 180 CDQAYLLDSR LSGYREVSRN FTFSAEANQC SYPGLPGRVF ISGVPEWTSN VMYYKTAEYL 240 RMKHALDNDV RGSIAIPILE ASGSSCCAVL ELVTCREKPN FDVEMDSVCR ALQAVNLQTS 300 TIPRRQYLSS NQKEALAEIR DVLRAVCHAH RLPLALAWIP CSYSKGANNE LVKVYGKNSR 360 EISLLCIEKT ACYVNDMEME GYVNACLEHY LREGQGIVGK ALISNKPSFS SDVKTFNICE 420 YPLVQHARKF GLNAAVATKL RSTFTGENDY ILEFFLPVSM KGSSEQQLLL DSLSNTMQRL 480 CRTLRTVSDA ESNEVMEVGF HGGETSNLPQ ATTTVSEESF QTTFLDTDVN STTSIFSNMS 540 SGNKTNDIAG SQGTLQQEFS GTKRSEKKKS STEKNVSLNV LQQYFSGSLK DAAKSLGVCP 600 TTLKRICRQH GIMRWPSRKI NKVNRSLRKI QTVLDSVQGV EGGLKFDSLT GEFVAVGPFI 660 QEFDTQKSTS SHHEDVFVRS QSDMDEDASL EPLKVKSYDG GGVKLEESVE TNQAEPGSLM 720 EPWISKQSGL NYSDDIDIGK RSEEVKKDKD LCVRRCLSSL ALAGDGTNAR IEHGNGIVEP 780 NQSISSSMSD SSNSSGAVLL GSSSTSMEQN WNQVRTHNNS GESGSSSTLT VKATYRDDTV 840 RFKLDPYLVG CSQLYREVAK RFKLQEGAFR LKYLDDEEEW VMLVTDSDLH ECFEILNGMR 900 KYTVKFLVSD LPMGSSAGSN GCLGTGS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g090100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK220674 | 0.0 | AK220674.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL21-80-B11. | |||
GenBank | BT010459 | 0.0 | BT010459.1 Arabidopsis thaliana RWP-RK domain containing protein (At3g59580) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010512222.1 | 0.0 | PREDICTED: protein NLP9-like | ||||
Swissprot | Q9M1B0 | 0.0 | NLP9_ARATH; Protein NLP9 | ||||
TrEMBL | R0FN83 | 0.0 | R0FN83_9BRAS; Uncharacterized protein | ||||
STRING | XP_010512222.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2299 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 0.0 | Nin-like family protein |