PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g090100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Nin-like
Protein Properties Length: 928aa    MW: 102566 Da    PI: 5.3664
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g090100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.63e-29573623252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     ek++sl++l++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++
  Csa05g090100.1 573 EKNVSLNVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 623
                     89***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.097557643IPR003035RWP-RK domain
PfamPF020422.9E-27575623IPR003035RWP-RK domain
SuperFamilySSF542771.28E-20817911No hitNo description
Gene3DG3DSA:3.10.20.2401.2E-21825908No hitNo description
SMARTSM006661.3E-21828911IPR000270PB1 domain
PROSITE profilePS5174518.698828903IPR000270PB1 domain
CDDcd064078.61E-32829910No hitNo description
PfamPF005645.4E-16829910IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 928 aa     Download sequence    Send to blast
MENPSREKGF CFPDTPVEEM EMDGWVKSLI FEEDMLTSSS STSELMNFES FASWCNNIPS  60
AATDILFSQY GLSTSQSTTP FGGHSYVGEK RPVHEISSQF HCLSDTEKLN GKRIKGNNNN  120
QTSSLTTGAV DYSVVPRSLS HTLDEKMIKA LSLFMEFSGE GILAQFWTPS RKGDQYMLST  180
CDQAYLLDSR LSGYREVSRN FTFSAEANQC SYPGLPGRVF ISGVPEWTSN VMYYKTAEYL  240
RMKHALDNDV RGSIAIPILE ASGSSCCAVL ELVTCREKPN FDVEMDSVCR ALQAVNLQTS  300
TIPRRQYLSS NQKEALAEIR DVLRAVCHAH RLPLALAWIP CSYSKGANNE LVKVYGKNSR  360
EISLLCIEKT ACYVNDMEME GYVNACLEHY LREGQGIVGK ALISNKPSFS SDVKTFNICE  420
YPLVQHARKF GLNAAVATKL RSTFTGENDY ILEFFLPVSM KGSSEQQLLL DSLSNTMQRL  480
CRTLRTVSDA ESNEVMEVGF HGGETSNLPQ ATTTVSEESF QTTFLDTDVN STTSIFSNMS  540
SGNKTNDIAG SQGTLQQEFS GTKRSEKKKS STEKNVSLNV LQQYFSGSLK DAAKSLGVCP  600
TTLKRICRQH GIMRWPSRKI NKVNRSLRKI QTVLDSVQGV EGGLKFDSLT GEFVAVGPFI  660
QEFDTQKSTS SHHEDVFVRS QSDMDEDASL EPLKVKSYDG GGVKLEESVE TNQAEPGSLM  720
EPWISKQSGL NYSDDIDIGK RSEEVKKDKD LCVRRCLSSL ALAGDGTNAR IEHGNGIVEP  780
NQSISSSMSD SSNSSGAVLL GSSSTSMEQN WNQVRTHNNS GESGSSSTLT VKATYRDDTV  840
RFKLDPYLVG CSQLYREVAK RFKLQEGAFR LKYLDDEEEW VMLVTDSDLH ECFEILNGMR  900
KYTVKFLVSD LPMGSSAGSN GCLGTGS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g090100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2206740.0AK220674.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL21-80-B11.
GenBankBT0104590.0BT010459.1 Arabidopsis thaliana RWP-RK domain containing protein (At3g59580) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010512222.10.0PREDICTED: protein NLP9-like
SwissprotQ9M1B00.0NLP9_ARATH; Protein NLP9
TrEMBLR0FN830.0R0FN83_9BRAS; Uncharacterized protein
STRINGXP_010512222.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22992768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.20.0Nin-like family protein