PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g086390.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 354aa MW: 40301.5 Da PI: 7.6055

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g086390.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.2	1.2e-51	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 l pGfrFhPtdeelv++yLk+kve+++l++ + i+++diyk++PwdLpk + ++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ Csa05g086390.1 16 LLPGFRFHPTDEELVSFYLKRKVEDRPLSI-KLITQLDIYKYDPWDLPKFAMTGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYSS 109 579*************************.89***********7777889***********************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +gl+k+Lv+y+g+a kg ktdW+mhe+rl Csa05g086390.1 110 dGSKCIGLRKSLVYYSGKAAKGIKTDWMMHEFRL 143 66677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-55	10	148	IPR003441	NAC domain
PROSITE profile	PS51005	52.653	16	166	IPR003441	NAC domain
Pfam	PF02365	2.7E-25	18	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MGEFNEEAAR KMEDVLLPGF RFHPTDEELV SFYLKRKVED RPLSIKLITQ LDIYKYDPWD 60 LPKFAMTGEK EWYFYCPRDR KYRNSTRPNR VTGAGFWKAT GTDRPIYSSD GSKCIGLRKS 120 LVYYSGKAAK GIKTDWMMHE FRLPSTSSHI LARRRADIKP CEKPSNISQI SLDKILPNSS 180 CLKFYNEDMN VAQPSSCFDH KEATESSTCT TTSPFSYLDF GSLDTHTPSP RLDQQYLRSL 240 LLVPQETQPP QFPKFINNYM ISSSADSSFL NQYTNLIGSN IDLSSAILAH KQCPALVSLP 300 QAHNHETHIE EIILSNTNHA LYHLPSSSVG DQKHHYMSLE NYYSSLSASF SIT*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MGEFNEEAAR KMEDVLLPGF RFHPTDEELV SFYLKRKVED RPLSIKLITQ LDIYKYDPWD  60
LPKFAMTGEK EWYFYCPRDR KYRNSTRPNR VTGAGFWKAT GTDRPIYSSD GSKCIGLRKS  120
LVYYSGKAAK GIKTDWMMHE FRLPSTSSHI LARRRADIKP CEKPSNISQI SLDKILPNSS  180
CLKFYNEDMN VAQPSSCFDH KEATESSTCT TTSPFSYLDF GSLDTHTPSP RLDQQYLRSL  240
LLVPQETQPP QFPKFINNYM ISSSADSSFL NQYTNLIGSN IDLSSAILAH KQCPALVSLP  300
QAHNHETHIE EIILSNTNHA LYHLPSSSVG DQKHHYMSLE NYYSSLSASF SIT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-51	1	143	1	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g086390.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189353	1e-100	AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019082649.1	0.0	PREDICTED: protein FEZ-like
Swissprot	Q9ZVH0	1e-119	FEZ_ARATH; Protein FEZ
TrEMBL	R0HW28	0.0	R0HW28_9BRAS; Uncharacterized protein
STRING	XP_010419107.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-119	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]