PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g086300.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Dof

Protein Properties

Length: 402aa MW: 44394.1 Da PI: 9.3382

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g086300.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.9	1.9e-37	129	188	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s+ntkfCyynny+++qPryfC++C+ryWt+GG++r vPvG+grrknk + Csa05g086300.1 129 PDKLLPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRSVPVGSGRRKNKGW 188 78999****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-30	126	186	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.7E-31	131	186	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.22	133	187	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	135	171	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MSKPRDTEIK LFGRRITSFL AVNHCDPSSV SPFHDVSSDQ SKEGSSSSSS SSCSPTIGPN 60 KVAADKNEKE NNRFKDPYIL SDLNKPLKAV SEISSSPRSS KTNCDQQSEI TTTTTSTTSR 120 EKSTALKKPD KLLPCPRCES ANTKFCYYNN YNVNQPRYFC RNCQRYWTAG GSMRSVPVGS 180 GRRKNKGWPS SNHYLQVTSE DCDNNHSGTI LSFGSSESSV TETGKHQSGD TTKINADSVF 240 QEHKHYQGFL PPQVMSPNNT SPWPYQWSPT GPNANFYPIP FYWGCTVPIC PTSETSPCLG 300 KRSRDHQTDG GINNTTTTST TRARLASESL RMNSEATKSA VWSKLPTKPE KKTQGFSLFN 360 GFDTKGNSNT RSFVVAEPSY SLQANPAAMS RVMNFRESMQ Q*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MSKPRDTEIK LFGRRITSFL AVNHCDPSSV SPFHDVSSDQ SKEGSSSSSS SSCSPTIGPN  60
KVAADKNEKE NNRFKDPYIL SDLNKPLKAV SEISSSPRSS KTNCDQQSEI TTTTTSTTSR  120
EKSTALKKPD KLLPCPRCES ANTKFCYYNN YNVNQPRYFC RNCQRYWTAG GSMRSVPVGS  180
GRRKNKGWPS SNHYLQVTSE DCDNNHSGTI LSFGSSESSV TETGKHQSGD TTKINADSVF  240
QEHKHYQGFL PPQVMSPNNT SPWPYQWSPT GPNANFYPIP FYWGCTVPIC PTSETSPCLG  300
KRSRDHQTDG GINNTTTTST TRARLASESL RMNSEATKSA VWSKLPTKPE KKTQGFSLFN  360
GFDTKGNSNT RSFVVAEPSY SLQANPAAMS RVMNFRESMQ Q*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00223	DAP	Transfer from AT1G69570	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g086300.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK176346	0.0	AK176346.1 Arabidopsis thaliana mRNA for putative H-protein promoter binding factor-2b, complete cds, clone: RAFL24-04-C08.
GenBank	BT025623	0.0	BT025623.1 Arabidopsis thaliana At1g69570 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010512001.1	0.0	PREDICTED: cyclic dof factor 5-like
Swissprot	Q9SEZ3	0.0	CDF5_ARATH; Cyclic dof factor 5
TrEMBL	R0IAS5	0.0	R0IAS5_9BRAS; Uncharacterized protein
STRING	XP_010512001.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13090	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69570.1	0.0	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689] Martín G, et al. Circadian Waves of Transcriptional Repression Shape PIF-Regulated Photoperiod-Responsive Growth in Arabidopsis. Curr. Biol., 2018. 28(2): p. 311-318.e5 [PMID:29337078]