PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g085850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SBP
Protein Properties Length: 422aa    MW: 47490.6 Da    PI: 6.8239
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g085850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.24e-42140215277
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     Cqv gC+ dls+ k+yh+rh+vC++hsk++vv+v+gleqrfCqqCsrfh lsefD++krsCrrrLa+hnerrrk++
  Csa05g085850.1 140 CQVYGCNLDLSSSKDYHKRHRVCDTHSKTSVVIVNGLEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRKPA 215
                     **************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.5E-33135201IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.735137214IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-39138217IPR004333Transcription factor, SBP-box
PfamPF031103.6E-32140213IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MDSWSYGRSM FLGNGTLLPS DSFAENRNFG QSLSNGLEND DDHHHVLISD LAGDSNGFSA  60
VSISKVVPSN LLHVEVEEEE EEEKQSSSSS KFSSQELSRI DFKLRSFLDL RNDVDTSSSG  120
FALPAKKPRA SNLCSQKPLC QVYGCNLDLS SSKDYHKRHR VCDTHSKTSV VIVNGLEQRF  180
CQQCSRFHFL SEFDDGKRSC RRRLAGHNER RRKPAFYYLP GKRHKLLRTS QGVVGNKFLE  240
NSSVSDFSLV LPEEFPGTFL YRVMDEHDHR ASSRLVSFKD EPTCSMFPAV GQNSSRVYES  300
KPAVYSPEVS SIWDLHESAS RSTCALSLLS AQSQQQHIPE TPNTTFSITQ PNHSPVDFNQ  360
MERLWIDPGK TNPAGSSSCT VKRSSTVDLL QLSSHLQRIE QQRNFSDDVK QEYNELYFTG  420
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-301392131084squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g085850.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511940.10.0PREDICTED: squamosa promoter-binding-like protein 6
RefseqXP_010511941.10.0PREDICTED: squamosa promoter-binding-like protein 6
SwissprotQ94JW80.0SPL6_ARATH; Squamosa promoter-binding-like protein 6
TrEMBLR0IA100.0R0IA10_9BRAS; Uncharacterized protein
STRINGXP_010511940.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.10.0SBP family protein
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]