PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g085670.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 317aa    MW: 34921.3 Da    PI: 5.0295
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g085670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.2e-1552101255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h+  E+rRR++iN++f+ Lrel+P++     +K + a+ L ++++Y+++Lq
  Csa05g085670.1  52 RSKHSVTEQRRRSKINERFQILRELIPNS----EQKRDTASFLLEVIDYVQYLQ 101
                     899*************************8....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1848121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-2249123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.35550100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-1352101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.99E-1452105No hitNo description
SMARTSM003531.6E-1156106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MRTGKGNQEE EDYGEEDFSS KREGPSSNTT VHSNNNNNNR DAKENDKASA IRSKHSVTEQ  60
RRRSKINERF QILRELIPNS EQKRDTASFL LEVIDYVQYL QERVQKYEGS YPGWSQEPTK  120
LTPWRNNHWR VQSLANHPVA INNGSGVGIS FPGKFEENAV ASTPAIVAEP QIPIDSDNGR  180
AITGKPIESQ PELDDKGLPP VQPILPLVQG EQANECPATS DGLGQSNDLV IEGGTISISS  240
AYSHELLSSL TQALQNAGID LSHAKLSVQI DLGKRANQGL THDEPSSKNP LSSDTQARDP  300
SFEEESEQSH KRMKTL*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g085670.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0023520.0BT002352.1 Arabidopsis thaliana clone C104950 putative DNA-binding protein (At1g69010) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511927.10.0PREDICTED: transcription factor BIM2 isoform X1
SwissprotQ9CAA40.0BIM2_ARATH; Transcription factor BIM2
TrEMBLR0I0050.0R0I005_9BRAS; Uncharacterized protein
STRINGXP_010511926.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59872745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.10.0BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]