PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g085400.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 366aa MW: 40426 Da PI: 6.1699

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g085400.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.6	5.1e-14	174	220	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L ++++++k+L Csa05g085400.1 174 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHVKEL 220 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.85	171	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-11	174	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-14	175	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-14	175	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-12	177	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.85E-5	184	223	No hit	No description
Gene3D	G3DSA:3.30.70.260	2.7E-4	260	315	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MCAKKEEEEE EDSSRAMNNI QNYQNDLFFH QLISHHHHHH DPSQSETFGA SGNVGSGFTI 60 FSQDSVSPIW SLPPATSIQP PFDQFPPPSS TPASFYGSFF NRNRAHHGQG LQFGYEGFGG 120 ATSAAHHHHE QLRILSEALG PVVQAGSGPF GLQAELGKMT AQEIMDAKAL AASKSHSEAE 180 RRRRERINNH LAKLRSILPN TTKTDKASLL AEVIQHVKEL KRETSVISET NLVPTESDEL 240 TVAFTEEEET GDGKFVIKAS LCCEDRSDLL PDMIKTLKAM RLKTLKAEIT TVGGRVKNVL 300 FVTGEESSGE EVEEQYCIGT IEEALKALME KSNVEESSSS GNAKRQRMSS HNTITIVEQQ 360 QHHHR*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MCAKKEEEEE EDSSRAMNNI QNYQNDLFFH QLISHHHHHH DPSQSETFGA SGNVGSGFTI  60
FSQDSVSPIW SLPPATSIQP PFDQFPPPSS TPASFYGSFF NRNRAHHGQG LQFGYEGFGG  120
ATSAAHHHHE QLRILSEALG PVVQAGSGPF GLQAELGKMT AQEIMDAKAL AASKSHSEAE  180
RRRRERINNH LAKLRSILPN TTKTDKASLL AEVIQHVKEL KRETSVISET NLVPTESDEL  240
TVAFTEEEET GDGKFVIKAS LCCEDRSDLL PDMIKTLKAM RLKTLKAEIT TVGGRVKNVL  300
FVTGEESSGE EVEEQYCIGT IEEALKALME KSNVEESSSS GNAKRQRMSS HNTITIVEQQ  360
QHHHR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	184	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g085400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY072161	0.0	AY072161.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.
GenBank	AY122983	0.0	AY122983.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010511901.1	0.0	PREDICTED: transcription factor bHLH30
Swissprot	Q9S7Y1	0.0	BH030_ARATH; Transcription factor bHLH30
TrEMBL	R0IF05	0.0	R0IF05_9BRAS; Uncharacterized protein
STRING	XP_010511901.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7048	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]