PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa05g084920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 529aa MW: 59751.9 Da PI: 4.4646 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.2 | 1.5e-07 | 14 | 57 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + + +++++C ++ +lC+ C + H+ H++v Csa05g084920.1 14 ARACDSCVKRRARWYCAADDAFLCHGCDGSVHSAnplarrHERV 57 578*****************************657888888876 PP | |||||||
2 | CCT | 68 | 2.6e-23 | 479 | 522 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Csa05g084920.1 479 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 522 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.495 | 12 | 59 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.3E-9 | 12 | 59 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.7E-6 | 14 | 57 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.39E-8 | 15 | 59 | No hit | No description |
PROSITE profile | PS51017 | 16.083 | 479 | 521 | IPR010402 | CCT domain |
Pfam | PF06203 | 7.4E-18 | 479 | 521 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 529 aa Download sequence Send to blast |
MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHGC DGSVHSANPL ARRHERVRLK 60 TASTGKHRHA DVSSPSPPHQ ATWHQGFTRK ARTPRGGKKG HTMVFHDLVP EMSTEDQMES 120 YEVEGQLIFE VPVMNPMVEE QCFNESVETK IEFPMMPVCF KSSDEEDEDN AESCLNGLFP 180 TDMELAQFTA DVETLLGGGI ERDFHPTEDL GLGEMLKIEK EEVEEEEGVA TRDVCDLNEL 240 IFEVPVMNPM VEEQCFNESV ETKIEFPMMP VCFKSSDEED EDNAESCLNG LFPTDMELAQ 300 FTADVETLLG GGIERDFHPT EDLGLGEMLK IEKEEVEEEE GVATRDVCDL NEVDETSPFE 360 ISFDYEYASK STYEEEEEDN EKEDVMKNVM DMGVNEMRGK IKEEKKEKAL MLRLDYESVL 420 STWGGQGIPW TAQKPSEIDL DMVCCPTDSM GESGADQAHH YNHFRGLGFH MGEAGDGGRE 480 ARVSRYREKR RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK RSSIAAAH* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 489 | 505 | RRTRLFSKKIRYEVRKL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa05g084920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010470801.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 6-like isoform X1 | ||||
Refseq | XP_010470802.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 6-like isoform X2 | ||||
Swissprot | Q8LG76 | 1e-152 | COL6_ARATH; Zinc finger protein CONSTANS-LIKE 6 | ||||
TrEMBL | R0GHM3 | 1e-175 | R0GHM3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010470801.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2467 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68520.1 | 1e-148 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
---|---|---|---|
|